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data vignette: how to use cellxgene prepare
coming soon!
example datasets to use with cellxgene
Examination of single cells from primary human pancreas tissue
cells: 2,544
tissue(s): pancreas
data: GEO Series GSE81547
paper: Enge, Martin, et al.
Tabula Muris
cells: 53,800
tissue(s): muscle, pancreas, bone, large intestine, heart, brain, fat, mammary gland, tongue , diaphragm, bladder, spleen, thymus, lung , skin, liver, trachea, kidney
data: Tabula Muris Data for Python
paper: Tabula Muris Consortium.
Transcriptional profiling of 1.3 million brain cells
cells: 1,330,000
tissue(s): brain
data: 10x Genomics