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https://github.com/chanzuckerberg/cellxgene.git
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d48647a655
* add sample ontologies file * add ontologies reducer * Move select category to own component * Dialog and Input factored out * refactoring categorical, partway * validationn * anno * suggest populates input * frontend for ontology working * initial implementation of back-end support for ontologies * edit is now dialog again * autosuggest working on edit * part way through create arbitrary label * handle choice in function * pass duplicate cat prop * editing works * update test to match new CLI params * fix occupancy alignment * edit category as dialogue * secondary button * remove stubbed out ontologies * add label setting upon new label creation * Update legal characters for labels (#1119) * Allow any term in the ontology (bypass legal name check) * Add hyphens and parens to legal characters in names * improve performance for large ontologies * correctly handle case where ontologies are disabled * fix logic error in CLI Co-authored-by: Bruce Martin <bruce@chanzuckerberg.com> * PR cleanup 1 * lint * validate user generated labels * finish hooking up connected suggest component * protect against undefined callbacks * Fix illegal characters error message * break out npm run commands * fix error detection on label edit Co-authored-by: Bruce Martin <bruce@chanzuckerberg.com> Co-authored-by: Sidney Bell <sidneymbell@users.noreply.github.com>
19 lines
398 B
Plaintext
19 lines
398 B
Plaintext
# TEMP anndata 0.7 breaks cellxgene - workaround
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anndata==0.6.22post1
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click>=6.7
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fastobo>=0.6.1
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Flask>=1.0.2
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Flask-Caching>=1.4.0
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Flask-Compress>=1.4.0
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Flask-Cors>=3.0.6
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Flask-RESTful>=0.3.6
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flatbuffers>=1.10.0
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fsspec>=0.4.4
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numpy>=1.15.2
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pandas>=0.24.2
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scipy>=1.3.0
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tables==3.5.1
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# TEMP workaround for https://github.com/theislab/scanpy/issues/832 aka h5py regression
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h5py==2.9.0
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requests>=2.22.0
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