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3660a6cc27
* icons, partway * redux for values * onChange * cancel * annotations lifecycle for category names * copy categorical * edit category * add Dataframe.withColsFrom * render user annotations; default add/delete annotation category * add label name to actions * category name edit * error checking improvements * change schema field isUserAnnotation to writable * always have an unassigned label; implement delete label * implement add new label and edit label name * label current cell selection * fix select exact bug in crossfilter * clean up categorical reducer * fix tests * remove debugging printf * implement subset/reset for user annotations * undo redo support for user annotations * remove duplicate button from categories * add modal * remove obsolete duplicate annotation reducers * remove old debugging printf * connect modal to annotation create and dup * initial full-stack wiring * finish up end-to-end wiring * fix existing unit tests * fix pytests to match new schema API * remove debugging printfs * add label file rotation * remove obsolete comment * add fbs encode/decode tests * add tests for writable annotations * simplify code * fix hashing bug with FBS encoding * lint * fix smoke tests * improve error checking in Dataframe.withColsFrom * add unit test for Dataframe.withColsFrom * add unit test for Dataframe.columns and Dataframe.renameCol * fix bug in FBS encode, add better error checks, refactor * add FBS encode/decode test * add clarifying comment * clean up action type names; fix state inconsistency in crossfilter update * change autosave timer to 2.5sec * sort categorical metadata render order so it remains consistent * add temporary autogenerated label for add-new-label operation * fix hover-over label menu interference with cell highlighting * remove debugging code * add missing reducer cases & fix typo * make dataframe memoize more general purpose * add dev mode for annos * fix error on select duplicate * handle zero occupancy categories * correctly maintain unclipped AND clipped world * correctly handle zero length FBS matrix and label files * ensure all writable categorical schema contains an unassigned category * handle case where building occupancy stack for category with no members * dialog for creating label, disable button if duplicate or empty * visually separate writeable * edit category * fix edit category name * remove debugging code * fix edit annotation label * visually define unassigned, change options * Pull in requirements.txt from `master` * label currently selected cells * duplicate label * lint * fix pytest merge issues * rename --label-file to --experimental-label-file * remove debugging console log * spelling error fix; fix bug found in PR review. * lint
129 lines
2.8 KiB
JavaScript
129 lines
2.8 KiB
JavaScript
export const datasets = {
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pbmc3k: {
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title: "pbmc3k",
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dataframe: {
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nObs: "2638",
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nVar: "1838",
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type: "float32"
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},
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categorical: {
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louvain: {
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"B cells": "342",
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"CD14+ Monocytes": "480",
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"CD4 T cells": "1144",
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"CD8 T cells": "316",
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"Dendritic cells": "37",
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"FCGR3A+ Monocytes": "150",
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Megakaryocytes: "15",
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"NK cells": "154"
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}
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},
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continuous: {
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n_genes: "int32",
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percent_mito: "float32",
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n_counts: "float32"
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},
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cellsets: {
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lasso: [
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{
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"coordinates-as-percent": { x1: 0.05, y1: 0.25, x2: 0.15, y2: 0.35 },
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count: "88"
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}
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],
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categorical: [
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{
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metadata: "louvain",
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values: ["B cells", "Megakaryocytes"],
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count: "357"
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}
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],
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continuous: [
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{
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metadata: "n_genes",
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"coordinates-as-percent": { x1: 0.25, y1: 0.5, x2: 0.55, y2: 0.5 },
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count: "1537"
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}
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]
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},
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diffexp: {
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cellset1: [
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{ kind: "categorical", metadata: "louvain", values: ["B cells"] }
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],
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cellset2: [
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{
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kind: "categorical",
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metadata: "louvain",
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values: ["CD4 T cells", "NK cells"]
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}
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],
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"gene-results": [
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"HLA-DRB1",
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"HLA-DPB1",
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"CD79A",
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"HLA-DPA1",
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"HLA-DQA1",
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"CD79B",
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"HLA-DQB1",
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"MS4A1",
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"IL32",
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"CD37"
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]
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},
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genes: {
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bulkadd: ["S100A8", "FCGR3A", "LGALS2", "GSTP1"],
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search: "ACD"
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},
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subset: {
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cellset1: [
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{
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kind: "categorical",
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metadata: "louvain",
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values: ["B cells", "Megakaryocytes"]
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}
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],
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count: "357",
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categorical: {
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louvain: {
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"B cells": "342",
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"CD14+ Monocytes": "0",
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"CD4 T cells": "0",
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"CD8 T cells": "0",
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"Dendritic cells": "0",
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"FCGR3A+ Monocytes": "0",
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Megakaryocytes: "15",
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"NK cells": "0"
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}
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},
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lasso: {
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"coordinates-as-percent": { x1: 0.45, y1: 0.05, x2: 0.65, y2: 0.15 },
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count: "39"
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}
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},
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scatter: {
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genes: { x: "S100A8", y: "FCGR3A" }
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},
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pan: {
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"coordinates-as-percent": { x1: 0.75, y1: 0.75, x2: 0.35, y2: 0.35 }
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},
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features: {
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panzoom: {
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lasso: {
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"coordinates-as-percent": { x1: 0.3, y1: 0.3, x2: 0.5, y2: 0.5 },
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count: "24"
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}
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}
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},
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clip: {
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min: "30",
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max: "70",
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metadata: "n_genes",
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gene: "S100A8",
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"coordinates-as-percent": { x1: 0.25, y1: 0.5, x2: 0.55, y2: 0.5 },
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count: "392",
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"gene-cell-count": "421"
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}
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}
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};
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