mirror of
https://github.com/chanzuckerberg/cellxgene.git
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546e272a60
* Add user-defined category-label colors Fixes https://github.com/chanzuckerberg/cellxgene/issues/1152 As described in https://github.com/chanzuckerberg/cellxgene/issues/1307 * Respond to feedback from @bkmartinjr in nodejs * Respond to feedback from @bkmartinjr in python * Add tests to the server module * Autoformat python, run linter * Make colors_get error handling specific * Respond to feedback from @bkmartinjr * Respond to feedback from @bkmartinjr * Fix whitespace * Fix python lint errrors * Update documentation * Add --disable-user-colors option to launch and cxgtool.py * Fix python formatting * Rename '--disable-user-colors' to '--disable-custom-colors'
148 lines
5.3 KiB
HTML
148 lines
5.3 KiB
HTML
<!DOCTYPE html>
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<html lang="en-US">
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<head>
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<meta charset="UTF-8">
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<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<!-- Begin Jekyll SEO tag v2.6.1 -->
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<title>Gallery | cellxgene</title>
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<meta name="generator" content="Jekyll v3.8.5" />
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<meta property="og:title" content="Gallery" />
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<meta property="og:locale" content="en_US" />
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<meta name="description" content="An interactive explorer for single-cell transcriptomics data" />
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<meta property="og:description" content="An interactive explorer for single-cell transcriptomics data" />
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<link rel="canonical" href="https://chanzuckerberg.github.io/cellxgene/posts/gallery.html" />
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<meta property="og:url" content="https://chanzuckerberg.github.io/cellxgene/posts/gallery.html" />
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<meta property="og:site_name" content="cellxgene" />
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<script type="application/ld+json">
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<!-- End Jekyll SEO tag -->
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<link rel="stylesheet" href="/cellxgene/assets/css/style.css?v=b45f000ecb36779dde84b689d463d17a077275d6">
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<!--[if lt IE 9]>
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<script src="https://cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.3/html5shiv.min.js"></script>
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<![endif]-->
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</head>
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<body>
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<div class="wrapper">
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<header>
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<img src="/cellxgene/cellxgene-logo.png" alt="cellxgene" />
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<p>An interactive explorer for single-cell transcriptomics data</p>
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<p>
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<a href="/cellxgene/" class="btn">Quick start</a><br>
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<a href="/cellxgene/posts/install" class="btn">Installation</a><br>
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<a href="/cellxgene/posts/gallery" class="btn"><b>Gallery</b></a><br>
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<a href="/cellxgene/posts/demo-data" class="btn">Demo datasets</a><br>
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<a href="/cellxgene/posts/prepare" class="btn">Preparing your data</a><br>
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<a href="/cellxgene/posts/launch" class="btn">Launching cellxgene</a><br>
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<a href="/cellxgene/posts/hosted" class="btn">Hosting cellxgene</a><br>
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<a href="/cellxgene/posts/annotations" class="btn">Annotating data</a><br>
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<a href="/cellxgene/posts/methods" class="btn">Methods</a><br>
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<a href="/cellxgene/posts/troubleshooting" class="btn">Troubleshooting</a><br>
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<a href="/cellxgene/posts/roadmap" class="btn">Roadmap</a><br>
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<a href="/cellxgene/posts/contribute" class="btn">Contributing (ideas or code)</a><br>
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<a href="/cellxgene/posts/contact" class="btn">Contact & finding help</a><br>
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<a href="/cellxgene/posts/cellxgene_cziscience_com" class="btn">cellxgene.cziscience.com</a><br>
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<a href="https://github.com/chanzuckerberg/cellxgene" class="btn" target="_blank">Code</a>
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</p>
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</header>
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<section>
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<h1 id="features">Features</h1>
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<h3 id="cross-filter-cells-and-color-by-metadata">Cross-filter cells and color by metadata</h3>
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<p><img src="../images/crossfilter.gif" width="600" /></p>
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<h3 id="compare-groups-of-cells-with-differential-expression">Compare groups of cells with differential expression</h3>
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<p><img src="../images/diffexp.gif" width="600" /></p>
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<h3 id="see-how-metadata-and-gene-expression-break-down-across-categories">See how metadata and gene expression break down across categories</h3>
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<p><img src="../images/category-breakdown.gif" width="600" /></p>
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<h3 id="find-cells-where-a-gene-is-expressed">Find cells where a gene is expressed</h3>
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<p><img src="../images/gene-expression.gif" width="600" /></p>
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<h3 id="compare-expression-of-multiple-genes">Compare expression of multiple genes</h3>
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<p><img src="../images/compare-genes.gif" width="600" /></p>
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<h1 id="interactive-demos">Interactive demos</h1>
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<p>Several groups have independently <a href="hosted">deployed</a> various versions of cellxgene to the web.
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Check out the cool data that our users are using cellxgene to explore!</p>
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<h3 id="kidney-cell-atlas"><a href="https://www.kidneycellatlas.org/">Kidney cell atlas</a></h3>
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<h3 id="tabula-muris-senis"><a href="https://tabula-muris-senis.ds.czbiohub.org/">Tabula muris senis</a></h3>
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<h3 id="hemocytes"><a href="https://hemocytes.cellgeni.sanger.ac.uk/">Hemocytes</a></h3>
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<h3 id="melanoma"><a href="https://melanoma.cellgeni.sanger.ac.uk/">Melanoma</a></h3>
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<h3 id="czis-own-cellxgene-site"><a href="cellxgene_cziscience_com">CZI’s own cellxgene site</a></h3>
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<p><em>Want us to link to your dataset here? <a href="contact">Just send us a note!</a></em></p>
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</section>
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<footer>
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<p>This project is maintained by <a href="https://github.com/chanzuckerberg">chanzuckerberg</a></p>
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</footer>
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</div>
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<script src="/cellxgene/assets/js/scale.fix.js"></script>
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</body>
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</html>
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