fork/cellxgene

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Charlotte Weaver 8b0d7d5cf6 Clarify install docs for python3 and venvs

2018-07-17 16:03:33 -07:00

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cellxgene

A React + Redux web application for exploring large scale single cell RNA sequence data.

Requirements

OS: OSX, Windows, Linux
python 3.6
npm
Google Chrome

Installation

clone project

git clone https://github.com/chanzuckerberg/cellxgene.git

install client

cd cellxgene
./bin/build-client

To use with virtual env for python (optional, but recommended)

ENV_NAME=cellxgene
python3 -m venv ${ENV_NAME}
source ${ENV_NAME}/bin/activate

install server

python3 setup.py install

run (with demo data)

cellxgene

Thanks to Alex Wolf his help with test data