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https://github.com/chanzuckerberg/cellxgene.git
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af3c6e1d8e
* split out config * add tests for base and app config, refactor client config out of app config * refactor default config retrieval * create config test class and helper functions * move default_config into server to fix import issue
64 lines
2.7 KiB
Python
64 lines
2.7 KiB
Python
import unittest
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from server.db.cellxgene_orm import CellxGeneUser, CellxGeneDataset, Annotation
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from server.db.db_utils import DbUtils
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from server.test.fixtures.database import TestDatabase
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class DatabaseTest(unittest.TestCase):
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db = DbUtils("postgresql://postgres:test_pw@localhost:5432")
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@classmethod
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def setUpClass(cls) -> None:
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TestDatabase()
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@classmethod
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def tearDownClass(cls) -> None:
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del cls.db
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def test_user_creation(self):
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one_user = self.db.get(table=CellxGeneUser, entity_id="test_user_id")
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self.assertEqual(one_user.id, "test_user_id")
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user_count = self.db.session.query(CellxGeneUser).count()
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self.assertGreater(user_count, 10)
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def test_dataset_creation(self):
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one_dataset = self.db.query(
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table_args=[CellxGeneDataset], filter_args=[CellxGeneDataset.name == "test_dataset"]
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)
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self.assertEqual(one_dataset[0].name, "test_dataset")
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dataset_count = self.db.session.query(CellxGeneDataset).count()
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self.assertGreater(dataset_count, 10)
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def test_annotation_creation(self):
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one_annotation = self.db.query(table_args=[Annotation], filter_args=[Annotation.tiledb_uri == "tiledb_uri"])[0]
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self.assertEqual(one_annotation.tiledb_uri, "tiledb_uri")
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annotation_count = self.db.session.query(Annotation).count()
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self.assertGreater(annotation_count, 10)
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def test_get_most_recent_annotation_for_user_dataset(self):
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dataset_id = str(
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self.db.query(table_args=[CellxGeneDataset], filter_args=[CellxGeneDataset.name == "test_dataset"])[0].id
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)
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# have to commit separately because created_at time written on the db server
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id="test_user_id", tiledb_uri="tiledb_uri_0"))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id="test_user_id", tiledb_uri="tiledb_uri_1"))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id="test_user_id", tiledb_uri="tiledb_uri_2"))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id="test_user_id", tiledb_uri="tiledb_uri_3"))
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self.db.session.commit()
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self.db.session.add(Annotation(dataset_id=dataset_id, user_id="test_user_id", tiledb_uri="tiledb_uri_4"))
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self.db.session.commit()
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most_recent_annotation = self.db.query_for_most_recent(
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Annotation, [Annotation.dataset_id == dataset_id, Annotation.user_id == "test_user_id"]
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)
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self.assertEqual(most_recent_annotation.tiledb_uri, "tiledb_uri_4")
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