mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-16 21:37:59 +08:00
a08e19bbd0
* Add numeric inputs for percentiles * Define initial values for percentile cutoffs in world reducer * add percentil to crossfilter dimensions * worldEqUniverse now handles cloned worlds * add Dataframe.mapColumns * Wire up handlers for percentile inputs * World reducer and stateManager know about continuousPercentileMin/Max * Create world as universe clone (not pointer) to avoid clobbering vals * Define basic actions for setting continuousPercentileMin/Max * Under the hood, deal with percentiles between 0 and 1 * Move percentile inputs to visualization settings menu * Fix padding for undo/redo buttons * Trigger world rebuild from percentile actions * BROKEN - pseudocode for clamping dataframe by percentiles upon world rebuild * fix error handling on clip quantiles; start world clipping implementation * more unclipped reorg * rename crossfilter.percentile to quantile * simplify schema access * update continuous legend when scale changes * update color cache when clip changes * clip obs annotations and var data when clip quantile changes * use own fromEntries * fix tests * stable non-finite float sort/search * clarify comments * fix syntax typo * use new stand-alone clip * clip expresssion data * add select tests for non-finite scalars * basic styles * clip UI now requires explicit commit * reset enable/disable accounts for clip percentiles * better error messages * fix bug in undo interaction with programatic min brush selection * small refactoring * support clipping of int data * do not perform unnecessary summarizations * improve caching of dataframe compiled columns * add percentile precompute to Dataframe.summarize * use Dataframe.summarize for clip percentiles * remove obsolete quantile code from corssfilter * histogram scale and label Y axis, add unclipped X range labels * layout tweaks * scatterplot now updates when clip changes * improve comments * remove debugging comment * rework clip number entry validation for usability * ui tweaks to histogram colors and layout * enable undo/redo for clip user action * refine UI on clip value entry * api cleanup * update confusing comment * clarify purpose of isValidDigitKeyEvent * fix misleading comment * apply appropriate button-group classes; do not mix span and div * variable name and comment changes suggested in PR review * rename sort to sortArray; remove unused and dead code path * naming changes suggested in PR review * code review improvements for clarity * more small changes from PR review * lint fixes for PR review * fix spelling error * clarify that function performs in-place modification of world * add comment to clarify intent of range operation * fix bad indents in comments * clean up __columnsAccessor comments and code * improve comments around clipPredicate * field name consistency * improve comment on quantiles params
151 lines
4.8 KiB
JSON
151 lines
4.8 KiB
JSON
{
|
|
"name": "cellxgene",
|
|
"version": "0.8.0",
|
|
"license": "MIT",
|
|
"description": "cellxgene is a web application for the interactive exploration of single cell sequence data.",
|
|
"repository": "https://github.com/chanzuckerberg/cellxgene",
|
|
"scripts": {
|
|
"backend-dev": "python3.6 -m venv cellxgene && source cellxgene/bin/activate && yes | pip uninstall cellxgene || true && pip install -e .. && cellxgene launch ",
|
|
"build": "npm run clean && webpack --config configuration/webpack/webpack.config.prod.js",
|
|
"clean": "rimraf build",
|
|
"dev": "npm run clean && webpack --config configuration/webpack/webpack.config.dev.js",
|
|
"e2e": "jest --verbose false --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
|
|
"lint": "eslint src",
|
|
"smoke-test": "start-server-and-test start-server-for-test :5000 e2e",
|
|
"start": "node server/development.js",
|
|
"start-server-for-test": "cellxgene launch -p 5000 ../example-dataset/pbmc3k.h5ad",
|
|
"test": "jest",
|
|
"unit-test": "jest --testPathIgnorePatterns e2e"
|
|
},
|
|
"engineStrict": true,
|
|
"engines": {
|
|
"npm": ">=3.0.0"
|
|
},
|
|
"eslintConfig": {
|
|
"extends": "./configuration/eslint/eslint.js"
|
|
},
|
|
"eslintIgnore": [
|
|
"src/util/stateManager/matrix_generated.js"
|
|
],
|
|
"resolutions": {
|
|
"eslint-scope": "3.7.1"
|
|
},
|
|
"dependencies": {
|
|
"@blueprintjs/core": "^3.15.0",
|
|
"@blueprintjs/icons": "^3.3.0",
|
|
"@blueprintjs/select": "^3.8.0",
|
|
"canvas-fit": "^1.5.0",
|
|
"d3": "^4.10.0",
|
|
"d3-scale-chromatic": "^1.3.0",
|
|
"flatbuffers": "^1.10.2",
|
|
"font-color-contrast": "^1.0.3",
|
|
"fuzzysort": "^1.1.4",
|
|
"gl-mat4": "^1.1.4",
|
|
"gl-matrix": "^2.7.1",
|
|
"is-number": "^7.0.0",
|
|
"key-pressed": "0.0.1",
|
|
"lodash": "^4.17.4",
|
|
"memoize-one": "^4.0.0",
|
|
"mouse-position": "^2.0.1",
|
|
"mouse-pressed": "^1.0.0",
|
|
"normalize.css": "^8.0.0",
|
|
"orbit-camera": "^1.0.0",
|
|
"query-string": "^6.1.0",
|
|
"react": "^16.6.0",
|
|
"react-autocomplete": "^1.7.2",
|
|
"react-dom": "^16.6.0",
|
|
"react-helmet": "^5.2.0",
|
|
"react-icons": "^3.2.2",
|
|
"react-redux": "^5.1.0",
|
|
"redux": "^4.0.1",
|
|
"redux-devtools-extension": "^2.13.5",
|
|
"redux-thunk": "^2.2.0",
|
|
"regl": "^1.3.9",
|
|
"scroll-speed": "^1.0.0",
|
|
"urijs": "^1.19.0"
|
|
},
|
|
"devDependencies": {
|
|
"@babel/core": "^7.1.5",
|
|
"@babel/plugin-proposal-class-properties": "^7.0.0",
|
|
"@babel/plugin-proposal-decorators": "^7.0.0",
|
|
"@babel/plugin-proposal-export-namespace-from": "^7.0.0",
|
|
"@babel/plugin-proposal-function-bind": "^7.0.0",
|
|
"@babel/plugin-proposal-nullish-coalescing-operator": "^7.2.0",
|
|
"@babel/plugin-proposal-optional-chaining": "^7.2.0",
|
|
"@babel/plugin-transform-react-constant-elements": "^7.0.0",
|
|
"@babel/plugin-transform-runtime": "^7.1.0",
|
|
"@babel/preset-env": "^7.1.5",
|
|
"@babel/preset-react": "^7.0.0",
|
|
"@babel/register": "^7.0.0",
|
|
"@babel/runtime": "^7.1.5",
|
|
"babel-core": "^7.0.0-bridge.0",
|
|
"babel-eslint": "^10.0.1",
|
|
"babel-jest": "^23.6.0",
|
|
"babel-loader": "^8.0.0",
|
|
"babel-preset-modern-browsers": "^12.0.0",
|
|
"chalk": "^2.4.2",
|
|
"connect-history-api-fallback": "^1.6.0",
|
|
"copy-webpack-plugin": "^4.6.0",
|
|
"css-loader": "^1.0.1",
|
|
"eslint": "^5.13.0",
|
|
"eslint-config-airbnb": "^17.1.0",
|
|
"eslint-config-prettier": "^4.0.0",
|
|
"eslint-loader": "^2.1.2",
|
|
"eslint-plugin-filenames": "^1.3.2",
|
|
"eslint-plugin-import": "^2.16.0",
|
|
"eslint-plugin-jest": "^22.2.2",
|
|
"eslint-plugin-jsx-a11y": "^6.2.1",
|
|
"eslint-plugin-react": "^7.12.4",
|
|
"express": "^4.14.0",
|
|
"file-loader": "^2.0.0",
|
|
"html-webpack-inline-source-plugin": "0.0.10",
|
|
"html-webpack-plugin": "^3.2.0",
|
|
"jest": "^24.1.0",
|
|
"jest-puppeteer": "^4.1.0",
|
|
"json-loader": "^0.5.4",
|
|
"mini-css-extract-plugin": "^0.4.1",
|
|
"puppeteer": "^1.12.1",
|
|
"rimraf": "^2.6.3",
|
|
"serve-favicon": "^2.3.0",
|
|
"start-server-and-test": "^1.7.11",
|
|
"style-loader": "^0.23.1",
|
|
"sw-precache-webpack-plugin": "^0.11.5",
|
|
"url-loader": "^1.1.0",
|
|
"webpack": "^4.25.1",
|
|
"webpack-cli": "^3.1.0",
|
|
"webpack-dev-middleware": "^3.1.3"
|
|
},
|
|
"jest": {
|
|
"testMatch": [
|
|
"**/__tests__/**/?(*.)(spec|test).js?(x)"
|
|
],
|
|
"testURL": "http://localhost/",
|
|
"setupFiles": [
|
|
"./__tests__/setupMissingGlobals.js"
|
|
]
|
|
},
|
|
"babel": {
|
|
"env": {
|
|
"test": {
|
|
"presets": [
|
|
"@babel/preset-env",
|
|
"@babel/preset-react"
|
|
],
|
|
"plugins": [
|
|
"@babel/plugin-proposal-function-bind",
|
|
"@babel/plugin-proposal-class-properties",
|
|
[
|
|
"@babel/plugin-proposal-decorators",
|
|
{
|
|
"legacy": true
|
|
}
|
|
],
|
|
"@babel/plugin-proposal-export-namespace-from",
|
|
"@babel/plugin-transform-react-constant-elements",
|
|
"@babel/plugin-transform-runtime"
|
|
]
|
|
}
|
|
}
|
|
}
|
|
}
|