mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-25 05:18:11 +08:00
Bruce Martin
b90447c387
* first flatbuffer schema * do not lint auto-generated files * add flatbuffers package * add flatbuffer module * wire up /data/X/T route * use flatbuffers for matrix data fetc * clarity and comments * add flatbuffer layout route * clean up obsolete code * fix tests * move flake8 config to setup.cfg * add comments * lint * rework layout routes for fbs * add more type support to fbs * lint * add flatbuffer support for annotations * function name improvements * fix botched merge with master * remove unused import * route cleanup for flatbuffers * rename function for clarity * add missing globals to Jest tests * fix client JS tests * fix routes for Python tests * comments for clarity * non-finite floating point hardening * more non-finite number handling * lint * fix tests for summarizeAnnotations * harden diffexp calculation against FP errors * cleanup unused code * lint * add encoding tests for flatbuffers * application type specified as strings * fix spelling error * improve variable names * add note about documentation gap * rename FBS DataFrame to Matrix
68 lines
2.0 KiB
JavaScript
68 lines
2.0 KiB
JavaScript
import _ from "lodash";
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import * as Universe from "../../../src/util/stateManager/universe";
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import * as REST from "./sampleResponses";
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describe("createUniverseFromRestV02Response", () => {
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/*
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test createUniverseFromRestV02Response - this function converts
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a set of REST 0.2 responses into a "new" Universe.
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createUniverseFromRestV02Response(
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configResponse,
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schemaResponse,
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annotationsObsResponse,
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annotationsVarResponse,
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layoutObsResponse
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) --> Universe
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where:
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configResponse: GET /.../config
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schemaResponse: GET /.../schema
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annotationsObsResponse: GET /.../annotations/obs
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annotationsVarResponse: GET /.../annotations/var
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layoutObsResponse: GET /.../layout/obs
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See spec in docs/REST_API.md.
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*/
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test("create from test data", () => {
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/*
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create a universe from sample data nad validate its shape & contents
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*/
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const { nObs, nVar } = REST.schema.schema.dataframe;
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const universe = Universe.createUniverseFromRestV02Response(
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REST.config,
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REST.schema,
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REST.annotationsObs,
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REST.annotationsVar,
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REST.layoutObs
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);
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expect(universe).toBeDefined();
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expect(universe).toMatchObject(
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expect.objectContaining({
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api: "0.2",
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nObs,
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nVar,
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schema: REST.schema.schema,
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obsAnnotations: expect.any(Array),
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varAnnotations: expect.any(Array),
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obsNameToIndexMap: expect.any(Object),
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varNameToIndexMap: expect.any(Object),
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obsLayout: expect.objectContaining({
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X: expect.any(Float32Array),
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Y: expect.any(Float32Array)
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}),
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varDataCache: expect.any(Object)
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})
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);
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expect(universe.obsAnnotations).toHaveLength(nObs);
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expect(_.keys(universe.obsNameToIndexMap)).toHaveLength(nObs);
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expect(universe.obsLayout.X).toHaveLength(nObs);
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expect(universe.obsLayout.Y).toHaveLength(nObs);
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expect(universe.varAnnotations).toHaveLength(nVar);
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expect(_.keys(universe.varNameToIndexMap)).toHaveLength(nVar);
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});
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});
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