mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-19 19:08:11 +08:00
* revert removal of cache control headers * checkpoint work on revising summary route * add summary query support to annoMatrix * summarize route cleanup * add mising file * clean up summarize route * add summary histogram * update deps * lint * more lint * lint * manage crossfiler during gene set state changes * remove obsolete debugging code * correctly perform async watch in histogram * better error handling
383 lines
8.6 KiB
JavaScript
383 lines
8.6 KiB
JavaScript
import sha1 from "sha1";
|
|
import {
|
|
_whereCacheGet,
|
|
_whereCacheCreate,
|
|
_whereCacheMerge,
|
|
} from "../../../src/annoMatrix/whereCache";
|
|
|
|
const schema = {};
|
|
|
|
describe("whereCache", () => {
|
|
test("whereCacheGet - where query, missing cache values", () => {
|
|
expect(
|
|
_whereCacheGet({}, schema, "X", {
|
|
where: {
|
|
field: "var",
|
|
column: "foo",
|
|
value: "bar",
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet({}, schema, "X", {
|
|
summarize: {
|
|
field: "var",
|
|
column: "foo",
|
|
values: ["bar"],
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet({ where: { X: {} } }, schema, "X", {
|
|
where: {
|
|
field: "var",
|
|
column: "foo",
|
|
value: "bar",
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet({ where: { X: { var: new Map() } } }, schema, "X", {
|
|
where: {
|
|
field: "var",
|
|
column: "foo",
|
|
value: "bar",
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet(
|
|
{ where: { X: { var: new Map([["foo", new Map()]]) } } },
|
|
schema,
|
|
"X",
|
|
{
|
|
where: {
|
|
field: "var",
|
|
column: "foo",
|
|
value: "bar",
|
|
},
|
|
}
|
|
)
|
|
).toEqual([undefined]);
|
|
});
|
|
|
|
test("whereCacheGet - summarize query, missing cache values", () => {
|
|
expect(
|
|
_whereCacheGet({}, schema, "X", {
|
|
summarize: {
|
|
method: "mean",
|
|
field: "var",
|
|
column: "foo",
|
|
values: ["bar"],
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet(
|
|
{ summarize: { X: { mean: { var: new Map() } } } },
|
|
schema,
|
|
"X",
|
|
{
|
|
summarize: {
|
|
method: "mean",
|
|
field: "var",
|
|
column: "foo",
|
|
values: ["bar"],
|
|
},
|
|
}
|
|
)
|
|
).toEqual([undefined]);
|
|
});
|
|
|
|
test("whereCacheGet - varied lookups", () => {
|
|
const whereCache = {
|
|
where: {
|
|
X: {
|
|
var: new Map([
|
|
[
|
|
"foo",
|
|
new Map([
|
|
["bar", [0]],
|
|
["baz", [1, 2]],
|
|
]),
|
|
],
|
|
]),
|
|
},
|
|
},
|
|
summarize: {
|
|
X: {
|
|
mean: {
|
|
var: new Map([
|
|
[
|
|
"foo",
|
|
new Map([
|
|
[sha1("bar"), [0]],
|
|
[sha1("baz"), [1, 2]],
|
|
]),
|
|
],
|
|
]),
|
|
},
|
|
},
|
|
},
|
|
};
|
|
|
|
expect(
|
|
_whereCacheGet(whereCache, schema, "X", {
|
|
where: {
|
|
field: "var",
|
|
column: "foo",
|
|
value: "bar",
|
|
},
|
|
})
|
|
).toEqual([0]);
|
|
expect(
|
|
_whereCacheGet(whereCache, schema, "X", {
|
|
summarize: {
|
|
method: "mean",
|
|
field: "var",
|
|
column: "foo",
|
|
values: ["bar"],
|
|
},
|
|
})
|
|
).toEqual([0]);
|
|
expect(
|
|
_whereCacheGet(whereCache, schema, "X", {
|
|
where: {
|
|
field: "var",
|
|
column: "foo",
|
|
value: "baz",
|
|
},
|
|
})
|
|
).toEqual([1, 2]);
|
|
expect(
|
|
_whereCacheGet(whereCache, schema, "X", {
|
|
summarize: {
|
|
method: "mean",
|
|
field: "var",
|
|
column: "foo",
|
|
values: ["baz"],
|
|
},
|
|
})
|
|
).toEqual([1, 2]);
|
|
expect(_whereCacheGet(whereCache, schema, "Y", {})).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet(whereCache, schema, "X", {
|
|
where: {
|
|
field: "whoknows",
|
|
column: "whatever",
|
|
value: "snork",
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet(whereCache, schema, "X", {
|
|
where: {
|
|
field: "var",
|
|
column: "whatever",
|
|
value: "snork",
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
expect(
|
|
_whereCacheGet(whereCache, schema, "X", {
|
|
where: {
|
|
field: "var",
|
|
column: "foo",
|
|
value: "snork",
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
});
|
|
|
|
test("whereCacheCreate, where query", () => {
|
|
const query = {
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "queryValue",
|
|
},
|
|
};
|
|
const wc = _whereCacheCreate(
|
|
"field",
|
|
{
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "queryValue",
|
|
},
|
|
},
|
|
[0, 1, 2]
|
|
);
|
|
expect(wc).toBeDefined();
|
|
expect(wc).toEqual(
|
|
expect.objectContaining({
|
|
where: {
|
|
field: {
|
|
queryField: expect.any(Map),
|
|
},
|
|
},
|
|
})
|
|
);
|
|
expect(wc.where.field.queryField.has("queryColumn")).toEqual(true);
|
|
expect(wc.where.field.queryField.get("queryColumn")).toBeInstanceOf(Map);
|
|
expect(
|
|
wc.where.field.queryField.get("queryColumn").has("queryValue")
|
|
).toEqual(true);
|
|
expect(_whereCacheGet(wc, schema, "field", query)).toEqual([0, 1, 2]);
|
|
});
|
|
|
|
test("whereCacheCreate, summarize query", () => {
|
|
const query = {
|
|
summarize: {
|
|
method: "method",
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
values: ["queryValue"],
|
|
},
|
|
};
|
|
const wc = _whereCacheCreate("field", query, [0, 1, 2]);
|
|
expect(_whereCacheGet(wc, schema, "field", query)).toEqual([0, 1, 2]);
|
|
});
|
|
|
|
test("whereCacheCreate, unknown query type", () => {
|
|
expect(_whereCacheCreate("field", { foobar: true }, [1])).toEqual({});
|
|
});
|
|
|
|
test("whereCacheMerge, where queries", () => {
|
|
let wc;
|
|
|
|
// remember, will mutate dst
|
|
const src = _whereCacheCreate(
|
|
"field",
|
|
{ where: { field: "queryField", column: "queryColumn", value: "foo" } },
|
|
["foo"]
|
|
);
|
|
|
|
const dst1 = _whereCacheCreate(
|
|
"field",
|
|
{ where: { field: "queryField", column: "queryColumn", value: "bar" } },
|
|
["dst1"]
|
|
);
|
|
wc = _whereCacheMerge(dst1, src);
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "foo",
|
|
},
|
|
})
|
|
).toEqual(["foo"]);
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "bar",
|
|
},
|
|
})
|
|
).toEqual(["dst1"]);
|
|
|
|
const dst2 = _whereCacheCreate(
|
|
"field",
|
|
{ where: { field: "queryField", column: "queryColumn", value: "bar" } },
|
|
["dst2"]
|
|
);
|
|
wc = _whereCacheMerge(dst2, dst1, src);
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "foo",
|
|
},
|
|
})
|
|
).toEqual(["foo"]);
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "bar",
|
|
},
|
|
})
|
|
).toEqual(["dst1"]);
|
|
|
|
wc = _whereCacheMerge({}, src);
|
|
expect(wc).toEqual(src);
|
|
|
|
wc = _whereCacheMerge({ where: { field: { queryField: new Map() } } }, src);
|
|
expect(wc).toEqual(src);
|
|
});
|
|
|
|
test("whereCacheMerge, mixed queries", () => {
|
|
const wc = _whereCacheMerge(
|
|
_whereCacheCreate(
|
|
"field",
|
|
{
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "foo",
|
|
},
|
|
},
|
|
["a"]
|
|
),
|
|
_whereCacheCreate(
|
|
"field",
|
|
{
|
|
summarize: {
|
|
method: "mean",
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
values: ["foo", "bar", "baz"],
|
|
},
|
|
},
|
|
["b"]
|
|
)
|
|
);
|
|
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "foo",
|
|
},
|
|
})
|
|
).toEqual(["a"]);
|
|
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
summarize: {
|
|
method: "mean",
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
values: ["foo", "bar", "baz"],
|
|
},
|
|
})
|
|
).toEqual(["b"]);
|
|
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
where: {
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
value: "does-not-exist",
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
|
|
expect(
|
|
_whereCacheGet(wc, schema, "field", {
|
|
summarize: {
|
|
method: "no-such-method",
|
|
field: "queryField",
|
|
column: "queryColumn",
|
|
values: ["does-not-exist"],
|
|
},
|
|
})
|
|
).toEqual([undefined]);
|
|
});
|
|
});
|