bmccandless b9e132a00c Updates due dependency version changes. (#1960) ...

* Updates due dependency version changes.

h5py recently changes and now values once returned as str are now returned as bytes.
This would have caused a much larger change, so instead the version is restricted to <3.0.0.

This caused the bulk of the testing failues.
A few other changes were needed to make a few other tests pass.

 #1959

2020-11-01 12:36:38 -08:00

..

app

config refactor (#1854)

2020-09-29 16:42:46 -05:00

auth

Fix bug in oauth. (#1949)

2020-10-26 09:39:06 -07:00

cli

config refactor (#1854)

2020-09-29 16:42:46 -05:00

common

Updates due dependency version changes. (#1960)

2020-11-01 12:36:38 -08:00

compute

fix pca call in reembeddings (#1793)

2020-08-25 17:21:39 -07:00

converters

config refactor (#1854)

2020-09-29 16:42:46 -05:00

data_anndata

Fix compatibility test (#1948)

2020-10-26 17:23:55 -05:00

data_common

remove AppFeature and all references to it in the code/tests (#1893)

2020-09-29 18:31:59 -05:00

data_cxg

Dunitz 1685 hosted annotations (#1789)

2020-08-24 18:26:08 -05:00

db

config refactor (#1854)

2020-09-29 16:42:46 -05:00

eb

Minor changes to eb server to use Docker (#1938)

2020-10-22 17:04:08 -07:00

test

Updates due dependency version changes. (#1960)

2020-11-01 12:36:38 -08:00

__init__.py

config refactor (#1854)

2020-09-29 16:42:46 -05:00

__main__.py

Makefile modularity, test targets, and auto-formatting (#1070)

2019-12-27 14:43:37 -08:00

default_config.py

Enhance the AppConfig with external config sources. (#1904)

2020-10-07 15:38:42 -07:00

Makefile

Performance test annotations (#1908)

2020-10-07 12:36:02 -05:00

requirements-dev.txt

Fix dependency issues in compatibility tests (#1951)

2020-10-30 10:47:12 -05:00

requirements-prepare.txt

Fix dependency issues in compatibility tests (#1951)

2020-10-30 10:47:12 -05:00

requirements.txt

Updates due dependency version changes. (#1960)

2020-11-01 12:36:38 -08:00