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* Scanpy engine now required Without the --engine param we need to error if scanpy engine cannot be imported rather than waiting for all engines * CLI options and help matches proposal (but not all options hooked up yet) * Flesh out top level args * Move computation args to engine * CLI input file (#374) * Fix test command (tests still won't work) * Input is file instead of directory - also renamed example file * Csweaver/debug (#376) * Respect debug flag for logging flask calls * Add loading messages * max categories (#377) * Add max categories * Rename max_categories to category_selection_limit * ensure whole numbers