mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-18 06:17:59 +08:00
0e48b335be
There is an interface change in 0.5.0 which is not compatible with our version of scanpy.
28 lines
745 B
Plaintext
28 lines
745 B
Plaintext
anndata>=0.7.0
|
|
boto3>=1.12.18
|
|
click>=7.1.2
|
|
fastobo>=0.6.1
|
|
Flask>=1.0.2
|
|
Flask-Compress>=1.4.0
|
|
Flask-Cors>=3.0.6
|
|
Flask-RESTful>=0.3.6
|
|
flask-server-timing>=0.1.2
|
|
flask-talisman>=0.7.0
|
|
flatbuffers>=1.11.0
|
|
flatten-dict>=0.2.0
|
|
fsspec>=0.4.4,<0.8.0
|
|
gunicorn>=20.0.4
|
|
h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5
|
|
numba>=0.49.1
|
|
numpy>=1.15.0
|
|
packaging>=20.0
|
|
pandas>=1.0,!=1.1 # pandas 1.1 breaks tests, https://github.com/pandas-dev/pandas/issues/35446
|
|
PyYAML>=5.3
|
|
scipy>=1.0
|
|
requests>=2.22.0
|
|
tiledb>=0.5.9,>=0.6.2,!=0.7.2
|
|
s3fs==0.4.2
|
|
scanpy==1.4.6 # Until we move to anndata 0.7.4 scanpy needs to be pinned here
|
|
sqlalchemy>=1.3.18
|
|
umap-learn<0.5.0 # The pinned version scanpy is not compatible with latest umap-learn
|