mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-20 20:46:08 +08:00
Madison Dunitz
af3c6e1d8e
* split out config * add tests for base and app config, refactor client config out of app config * refactor default config retrieval * create config test class and helper functions * move default_config into server to fix import issue
63 lines
1.7 KiB
Python
63 lines
1.7 KiB
Python
f"""server:
|
|
app:
|
|
verbose: {verbose}
|
|
debug: {debug}
|
|
host: {host}
|
|
port: {port}
|
|
open_browser: {open_browser}
|
|
force_https: {force_https}
|
|
flask_secret_key: {flask_secret_key}
|
|
generate_cache_control_headers: {generate_cache_control_headers}
|
|
server_timing_headers: {server_timing_headers}
|
|
csp_directives: {csp_directives}
|
|
api_base_url: {api_base_url}
|
|
web_base_url: {web_base_url}
|
|
authentication:
|
|
type: {auth_type}
|
|
params_oauth:
|
|
oauth_api_base_url: {oauth_api_base_url}
|
|
client_id: {client_id}
|
|
client_secret: {client_secret}
|
|
jwt_decode_options: {jwt_decode_options}
|
|
session_cookie: {session_cookie}
|
|
cookie: {cookie}
|
|
|
|
multi_dataset:
|
|
dataroot: {dataroot}
|
|
index: {index}
|
|
allowed_matrix_types: {allowed_matrix_types}
|
|
matrix_cache:
|
|
max_datasets: {max_cached_datasets}
|
|
timelimit_s: {timelimit_s}
|
|
|
|
single_dataset:
|
|
datapath: {dataset_datapath}
|
|
obs_names: {obs_names}
|
|
var_names: {var_names}
|
|
about: {about}
|
|
title: {title}
|
|
|
|
diffexp:
|
|
alg_cxg: # number of threads to use is computed from: min(max_workers, cpu_multipler * cpu_count)
|
|
max_workers: {diffexp_max_workers}
|
|
cpu_multiplier: {cpu_multiplier}
|
|
target_workunit: {target_workunit} # The target number of matrix elements that are evaluated in one thread.
|
|
|
|
data_locator:
|
|
s3:
|
|
region_name: {data_locater_region_name}
|
|
|
|
adaptor:
|
|
cxg_adaptor:
|
|
tiledb_ctx:
|
|
sm.tile_cache_size: {cxg_tile_cache_size}
|
|
sm.num_reader_threads: {cxg_num_reader_threads}
|
|
|
|
anndata_adaptor:
|
|
backed: {anndata_backed}
|
|
|
|
limits:
|
|
column_request_max: {column_request_max}
|
|
diffexp_cellcount_max: {diffexp_cellcount_max}
|
|
"""
|