Files
cellxgene/client/src/reducers/universe.js
T
Sidney Bell a08e19bbd0 Clip continuous values based on percentile cutoffs (#672)
* Add numeric inputs for percentiles

* Define initial values for percentile cutoffs in world reducer

* add percentil to crossfilter dimensions

* worldEqUniverse now handles cloned worlds

* add Dataframe.mapColumns

* Wire up handlers for percentile inputs

* World reducer and stateManager know about continuousPercentileMin/Max

* Create world as universe clone (not pointer) to avoid clobbering vals

* Define basic actions for setting continuousPercentileMin/Max

* Under the hood, deal with percentiles between 0 and 1

* Move percentile inputs to visualization settings menu

* Fix padding for undo/redo buttons

* Trigger world rebuild from percentile actions

* BROKEN - pseudocode for clamping dataframe by percentiles upon world rebuild

* fix error handling on clip quantiles; start world clipping implementation

* more unclipped reorg

* rename crossfilter.percentile to quantile

* simplify schema access

* update continuous legend when scale changes

* update color cache when clip changes

* clip obs annotations and var data when clip quantile changes

* use own fromEntries

* fix tests

* stable non-finite float sort/search

* clarify comments

* fix syntax typo

* use new stand-alone clip

* clip expresssion data

* add select tests for non-finite scalars

* basic styles

* clip UI now requires explicit commit

* reset enable/disable accounts for clip percentiles

* better error messages

* fix bug in undo interaction with programatic min brush selection

* small refactoring

* support clipping of int data

* do not perform unnecessary summarizations

* improve caching of dataframe compiled columns

* add percentile precompute to Dataframe.summarize

* use Dataframe.summarize for clip percentiles

* remove obsolete quantile code from corssfilter

* histogram scale and label Y axis, add unclipped X range labels

* layout tweaks

* scatterplot now updates when clip changes

* improve comments

* remove debugging comment

* rework clip number entry validation for usability

* ui tweaks to histogram colors and layout

* enable undo/redo for clip user action

* refine UI on clip value entry

* api cleanup

* update confusing comment

* clarify purpose of isValidDigitKeyEvent

* fix misleading comment

* apply appropriate button-group classes; do not mix span and div

* variable name and comment changes suggested in PR review

* rename sort to sortArray; remove unused and dead code path

* naming changes suggested in PR review

* code review improvements for clarity

* more small changes from PR review

* lint fixes for PR review

* fix spelling error

* clarify that function performs in-place modification of world

* add comment to clarify intent of range operation

* fix bad indents in comments

* clean up __columnsAccessor comments and code

* improve comments around clipPredicate

* field name consistency

* improve comment on quantiles params
2019-04-30 16:20:10 -07:00

48 lines
1.2 KiB
JavaScript

import { ControlsHelpers } from "../util/stateManager";
const Universe = (state = null, action, nextSharedState, prevSharedState) => {
switch (action.type) {
case "initial data load complete (universe exists)": {
const { universe } = action;
return universe;
}
case "expression load success": {
let { varData } = state;
// Lazy load new expression data into the varData dataframe, if
// not already present.
//
Object.entries(action.expressionData).forEach(([key, val]) => {
// If not already in universe.varData, save entire expression column
if (!varData.hasCol(key)) {
varData = varData.withCol(key, val);
}
});
// Prune size of varData "cache" if getting out of hand....
//
const { userDefinedGenes, diffexpGenes } = prevSharedState;
const allTheGenesWeNeed = [
...new Set(
userDefinedGenes,
diffexpGenes,
Object.keys(action.expressionData)
)
];
varData = ControlsHelpers.pruneVarDataCache(varData, allTheGenesWeNeed);
return {
...state,
varData
};
}
default: {
return state;
}
}
};
export default Universe;