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https://github.com/chanzuckerberg/cellxgene.git
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* Switch push tests to Github Actions * Add nightly tests * Add anndata check * Add test status badges * Add anndata 0.6.22.post1 workaround * Rename Nightly tests to Compatibility Tests * Fix to anndata fix * Turn on cron schedule * Fix badge mardown in README.md * Fix cron schedule
102 lines
2.6 KiB
YAML
102 lines
2.6 KiB
YAML
name: Push Tests
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on: [push]
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env:
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JEST_ENV: prod
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jobs:
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lint:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.7
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uses: actions/setup-python@v1
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with:
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python-version: 3.7
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- name: Lint with flake8
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run: |
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pip install flake8
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make lint
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unit-test:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.7
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uses: actions/setup-python@v1
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with:
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python-version: 3.7
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- name: Python cache
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uses: actions/cache@v1
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with:
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path: ~/.cache/pip
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key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
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restore-keys: |
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${{ runner.os }}-pip-
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- name: Node cache
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uses: actions/cache@v1
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with:
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path: ~/.npm
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key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
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restore-keys: |
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${{ runner.os }}-node-
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- name: Install dependencies
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run: make pydist install-dist dev-env-server
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- name: Unit tests
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run: make unit-test
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smoke-tests:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.7
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uses: actions/setup-python@v1
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with:
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python-version: 3.7
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- name: Python cache
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uses: actions/cache@v1
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with:
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path: ~/.cache/pip
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key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
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restore-keys: |
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${{ runner.os }}-pip-
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- name: Node cache
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uses: actions/cache@v1
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with:
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path: ~/.npm
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key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
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restore-keys: |
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${{ runner.os }}-node-
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- name: Install dependencies
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run: make pydist install-dist
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- name: Smoke tests (without annotations feature)
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run: cd client && make smoke-test
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smoke-tests-annotations:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.7
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uses: actions/setup-python@v1
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with:
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python-version: 3.7
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- name: Python cache
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uses: actions/cache@v1
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with:
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path: ~/.cache/pip
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key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
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restore-keys: |
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${{ runner.os }}-pip-
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- name: Node cache
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uses: actions/cache@v1
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with:
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path: ~/.npm
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key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
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restore-keys: |
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${{ runner.os }}-node-
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- name: Install dependencies
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run: make pydist install-dist
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- name: Smoke tests (with annotations feature)
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run: cd client && make smoke-test-annotations
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