mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-15 20:57:56 +08:00
e5dfd6e8fa
* add lint-client and lint-diff-client targets * add lint-diff and lint targets * prettier * add lint-diff call to lint task * temp * tweak lint-diff * add lint for PRs and lint for master * remove temp * remove incorrect branches syntax, use github_ref * pull all branches * format * proper target and comment * create separate steps with conditionals * fix indentation * refactor lint->lint-server, introduce lint to lint all * trade diff-index for diff, do check against base instead of master * remove fetching all branches * Revert "remove fetching all branches" This reverts commit26ce7a0f05. * tweak comparison * use local eslint * add eslint dep install * temp * grab only base * simplify fetch * add pull_request type trigger * specify pushes only to master * change conditionals to be based on event name * Revert "temp" This reverts commit3d59134cc0. * "branch" => "branches" * create separate installation step * change command based on os
111 lines
2.7 KiB
Makefile
111 lines
2.7 KiB
Makefile
include ../common.mk
|
|
# https://stackoverflow.com/a/14777895/9587410
|
|
ifeq ($(shell uname),Darwin) # is Windows_NT on XP, 2000, 7, Vista, 10...
|
|
IS_DARWIN := "true"
|
|
endif
|
|
|
|
DATASET := $(if $(DATASET),$(DATASET),../example-dataset/pbmc3k.h5ad)
|
|
ANNOTATIONS := $(if $(ANNOTATIONS),$(ANNOTATIONS),../server/test/test_datasets/pbmc3k-annotations.csv)
|
|
ANNOTATIONS_FILENAME := $(shell basename $(ANNOTATIONS))
|
|
|
|
# Packaging
|
|
.PHONY: clean
|
|
clean:
|
|
rm -rf node_modules
|
|
|
|
.PHONY: ci
|
|
ci:
|
|
npm ci
|
|
|
|
.PHONY: install
|
|
install:
|
|
npm install
|
|
|
|
.PHONY: build
|
|
build:
|
|
npm run build
|
|
|
|
# Formatting code
|
|
|
|
.PHONY: lint
|
|
lint:
|
|
npx eslint .
|
|
|
|
.PHONY: lint-diff
|
|
lint-diff:
|
|
# Get client diff against master, find all js/jsx files, remove the client prefex, run eslinst against result
|
|
git diff --name-only --diff-filter=d origin/master...HEAD -- ../client/ | grep -E "(.*)\.(jsx|js)" | sed "s/client\///" | $(if $(IS_DARWIN),xargs ./node_modules/.bin/eslint,xargs -r ./node_modules/.bin/eslint)
|
|
|
|
|
|
# Development convenience methods
|
|
|
|
.PHONY: server-requirements
|
|
server-requirements:
|
|
virtualenv -p python3 ../venv
|
|
source ../venv/bin/activate && \
|
|
pip install -r ../server/requirements-dev.txt && \
|
|
yes | pip uninstall cellxgene || true && \
|
|
pip install -e ..
|
|
|
|
.PHONY: start-frontend
|
|
start-frontend:
|
|
node server/development.js
|
|
|
|
.PHONY: start-server
|
|
start-server:
|
|
cellxgene launch -p $(CXG_SERVER_PORT) $(CXG_OPTIONS) $(DATASET)
|
|
|
|
.PHONY: backend-dev
|
|
backend-dev: server-requirements
|
|
source ../venv/bin/activate && CXG_OPTIONS='--debug' $(MAKE) start-server
|
|
|
|
.PHONY: backend-dev-anno-ontology
|
|
backend-dev-anno-ontology: server-requirements
|
|
CXG_OPTIONS='--experimental-annotations-ontology --debug' \
|
|
$(MAKE) backend-dev
|
|
|
|
.PHONY: test
|
|
test:
|
|
node node_modules/jest/bin/jest.js
|
|
|
|
.PHONY: e2e
|
|
e2e:
|
|
node node_modules/jest/bin/jest.js \
|
|
--verbose false \
|
|
--config __tests__/e2e/e2eJestConfig.json \
|
|
e2e/e2e.test.js
|
|
|
|
.PHONY: e2e-annotations
|
|
e2e-annotations:
|
|
node node_modules/jest/bin/jest.js \
|
|
--verbose false \
|
|
--config __tests__/e2e/e2eJestConfig.json \
|
|
e2e/e2eAnnotations.test.js
|
|
|
|
.PHONY: smoke-test
|
|
smoke-test:
|
|
start_server_and_test \
|
|
'CXG_OPTIONS="--disable-annotations" $(MAKE) start-server' \
|
|
$(CXG_SERVER_PORT) \
|
|
'$(MAKE) e2e'
|
|
|
|
|
|
.PHONY: smoke-test-annotations
|
|
smoke-test-annotations:
|
|
$(eval TMP_DIR := $(shell mktemp -d /tmp/cellxgene_XXXXXX))
|
|
cp $(ANNOTATIONS) $(TMP_DIR)/ && \
|
|
start_server_and_test \
|
|
'CXG_OPTIONS="--annotations-file $(TMP_DIR)/$(ANNOTATIONS_FILENAME)" $(MAKE) start-server' \
|
|
$(CXG_SERVER_PORT) \
|
|
'$(MAKE) e2e-annotations'
|
|
rm -rf $(TMP_DIR)
|
|
|
|
.PHONY: unit-test
|
|
unit-test:
|
|
node node_modules/jest/bin/jest.js \
|
|
--testPathIgnorePatterns e2e
|
|
|
|
# pass remaining commands through to npm run
|
|
%:
|
|
npm run $(*)
|