mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-20 03:18:12 +08:00
* prototyping
* render histos on open gene set
* prototyping
* render histos on open gene set
* factor out add genes to own component
* remove unused import
* mock reducer
* color by geneset stub
* menus and buttons
* geneset dialogue stub
* remove heatmap mock
* componetize histogram
* reenable add genes
* re-add isuserdefined
* test data
* remove have fetched
* add isExpanded state to gene, and pass to histogram
* expand button
* toggleable
* mini
* bump number of genes to 50
* don't clear diffexp on subset
* move create category to top
* render diffexp as geneset
* geneset show mean expression
* gene set reducer
* add geneset UI reducer
* wire e2e gene set loading prototype
* fix sniffing bug
* fix typo
* add gene modals
* client/src/actions/
* add autosave
* rename data-dir cli param
* add geneset, add gene, delete set
* prototype: remove csv upload placeholder
* handle delete gene from set
* prepopulate geneset with genes from modal
* add geneset: rename action
* icons, language consistency
* chevron after
* handle empty string case on genes for create geneset
* edit geneset
* fix language on create
* copy correction
* add popper2
upgrade react popper
upgrade react popper
adding popover2 package
* truncate uses tooltip2
* gene set button text typo
* remove logging
* moving server over
* remove test imports
* don't try to destructure map, use array.from
* fix add gene map datastructure error
* Revert "fix add gene map datastructure error"
This reverts commit b0eed45952.
* name --> genesetName, genes --> geneSymbols
* add gene to geneset, temporary format
* handle empty case, clear form input
* lint -- genesets wasn't passed via props
* userinfo
* move genes string to object conversion to action
* remove tmp gene description
* emptystring default for description
* remove empty string
* remove top level package json
* remove package lock as well
* remove flag for feature toggle
* remove comments in geneset
* comment cleanup
* remove comment
* revert diffexp genes to 10
* color by gene set
* disable color by gene set
* Gene menus are now inline, remove dead prototype code
* remove todo, magic number to variable
* remove jshint in rightsidebar
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
* remove unused geneset validation code
* tmp format pending geneset description
* move magic number into variable
* reorganize genesetsUI reducer pending tests
* rewire edit given new action name
* add basic validation and feedback for geneset name uniqueness
* mv annoDialog
* mv label, repair paths
* Update client/src/components/brushableHistogram/header.js
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
* add imports for icon in histo
* update jest snapshots given blueprint/tooltip2 usage of index -1
* ensure no empty paragraph
* intent from blueprint
* remove remainder of jshint references
* do not push undo when autosave fires
* fix autosave bugs
* remove todos
* clamp to util
* scient to util
* revert clearing diffexp
* rename value to be more specific stacked bar
* clean up logging and commetns
* remove gene entry tests pending rewrite
* tab index -1
* update jest snapshot, blueprint tooltip 2
* caret margin
* snapshot update
* ensure histogram is centered
* add geneset actions to config
* comment maybeScientific
* comment clamp
* comment ui reducer
* remove prototype code
* remove error log
* remove references to bl.ocks
* componetize parseBulkGeneString
* catch case where geneset rename same name
* genesetui reducer tests
* add geneset ui to index reducer config
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
191 lines
6.0 KiB
JSON
191 lines
6.0 KiB
JSON
{
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"name": "cellxgene",
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"version": "0.16.7",
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"license": "MIT",
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"description": "cellxgene is a web application for the interactive exploration of single cell sequence data.",
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"repository": "https://github.com/chanzuckerberg/cellxgene",
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"scripts": {
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"build": "npm run clean && webpack --config",
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"clean": "rimraf build",
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"dev": "npm run build -- configuration/webpack/webpack.config.dev.js",
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"e2e": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
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"e2e-annotations": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2eAnnotations.test.js",
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"e2e-prod": "CXG_URL_BASE='https://cellxgene.cziscience.com/d/pbmc3k.cxg/' jest --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
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"fmt": "eslint --fix src __tests__",
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"lint": "eslint --fix src __tests__",
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"prod": "npm run build -- configuration/webpack/webpack.config.prod.js",
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"test": "jest --testPathIgnorePatterns e2e"
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},
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"engineStrict": true,
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"engines": {
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"npm": ">=3.0.0"
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},
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"eslintConfig": {
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"extends": "./configuration/eslint/eslint.js"
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},
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"eslintIgnore": [
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"src/util/stateManager/matrix_generated.js"
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],
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"resolutions": {
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"eslint-scope": "3.7.1"
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},
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"browserslist": [
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"Chrome > 60",
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"Safari >= 10.1",
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"iOS >= 10.3",
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"Firefox >= 60",
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"Edge >= 79",
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"not Explorer > 0"
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],
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"dependencies": {
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"@blueprintjs/core": "^3.30.0",
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"@blueprintjs/icons": "^3.19.0",
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"@blueprintjs/popover2": "^0.3.0",
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"@blueprintjs/select": "^3.13.5",
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"abort-controller": "^3.0.0",
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"core-js": "^3.6.5",
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"d3": "^4.10.0",
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"d3-scale-chromatic": "^1.5.0",
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"fastestsmallesttextencoderdecoder": "^1.0.22",
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"flatbuffers": "^1.11.0",
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"fuzzysort": "^1.1.4",
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"gl-mat4": "^1.2.0",
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"gl-matrix": "^3.3.0",
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"gl-vec3": "^1.1.3",
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"is-number": "^7.0.0",
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"lodash": "^4.17.20",
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"memoize-one": "^5.1.1",
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"pako": "^1.0.11",
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"react": "^16.13.1",
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"react-async": "^10.0.1",
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"react-dom": "^16.13.1",
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"react-easy-emoji": "^1.4.0",
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"react-flip-toolkit": "^7.0.12",
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"react-helmet": "^5.2.1",
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"react-icons": "^3.10.0",
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"react-popper": "^2.2.4",
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"react-redux": "^7.2.0",
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"redux": "^4.0.5",
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"redux-thunk": "^2.3.0",
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"regenerator-runtime": "^0.13.7",
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"regl": "^1.6.1",
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"script-ext-html-webpack-plugin": "^2.1.4",
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"tinyqueue": "^2.0.3",
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"webpack-merge": "^5.0.9",
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"whatwg-fetch": "^3.2.0"
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},
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"devDependencies": {
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"@babel/core": "^7.10.5",
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"@babel/plugin-proposal-class-properties": "^7.10.4",
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"@babel/plugin-proposal-decorators": "^7.10.5",
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"@babel/plugin-proposal-export-namespace-from": "^7.10.4",
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"@babel/plugin-proposal-function-bind": "^7.10.5",
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"@babel/plugin-proposal-nullish-coalescing-operator": "^7.10.4",
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"@babel/plugin-proposal-optional-chaining": "^7.10.4",
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"@babel/plugin-transform-react-constant-elements": "^7.10.4",
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"@babel/plugin-transform-runtime": "^7.10.5",
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"@babel/preset-env": "^7.10.4",
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"@babel/preset-react": "^7.10.4",
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"@babel/register": "^7.10.5",
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"@babel/runtime": "^7.10.5",
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"@blueprintjs/eslint-plugin": "^0.3.0",
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"@sentry/webpack-plugin": "^1.12.0",
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"babel-eslint": "^10.1.0",
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"babel-jest": "^26.1.0",
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"babel-loader": "^8.1.0",
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"babel-preset-modern-browsers": "^14.2.1",
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"chalk": "^4.1.0",
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"cheerio": "^1.0.0-rc.3",
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"clean-css": "^4.2.3",
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"clean-webpack-plugin": "^3.0.0",
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"codecov": "^3.7.1",
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"connect-history-api-fallback": "^1.6.0",
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"css-loader": "^3.6.0",
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"eslint": "^7.4.0",
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"eslint-config-airbnb": "^18.2.0",
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"eslint-config-prettier": "^6.11.0",
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"eslint-loader": "^3.0.4",
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"eslint-plugin-compat": "^3.8.0",
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"eslint-plugin-eslint-comments": "^3.2.0",
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"eslint-plugin-filenames": "^1.3.2",
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"eslint-plugin-import": "^2.22.0",
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"eslint-plugin-jest": "^23.18.0",
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"eslint-plugin-jsx-a11y": "^6.3.1",
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"eslint-plugin-prettier": "^3.1.4",
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"eslint-plugin-react": "^7.20.3",
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"eslint-plugin-react-hooks": "^4.0.8",
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"expect-puppeteer": "^4.4.0",
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"express": "^4.17.1",
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"favicons-webpack-plugin": "^3.0.1",
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"file-loader": "^6.0.0",
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"html-webpack-plugin": "^4.3.0",
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"husky": "^4.2.5",
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"jest": "^26.1.0",
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"jest-circus": "^26.1.0",
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"jest-environment-puppeteer": "^4.4.0",
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"jest-fetch-mock": "^3.0.3",
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"jest-puppeteer": "^4.4.0",
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"json-loader": "^0.5.7",
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"lint-staged": "^10.2.11",
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"mini-css-extract-plugin": "^0.9.0",
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"obsolete-webpack-plugin": "^0.5.6",
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"optimize-css-assets-webpack-plugin": "^5.0.3",
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"prettier": "^2.0.5",
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"puppeteer": "^3.3.0",
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"rimraf": "^3.0.2",
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"serve-favicon": "^2.5.0",
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"style-loader": "^1.2.1",
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"sw-precache-webpack-plugin": "^1.0.0",
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"terser-webpack-plugin": "^3.0.7",
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"url-loader": "^4.1.0",
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"webpack": "^4.43.0",
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"webpack-cli": "^3.3.12",
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"webpack-dev-middleware": "^3.7.2"
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},
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"jest": {
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"testMatch": [
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"**/__tests__/**/?(*.)(spec|test).js?(x)"
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],
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"setupFiles": [
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"./__tests__/setupMissingGlobals.js"
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],
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"coverageDirectory": "./coverage/",
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"collectCoverage": true
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},
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"babel": {
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"env": {
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"test": {
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"presets": [
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"@babel/preset-env",
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"@babel/preset-react"
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],
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"plugins": [
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"@babel/plugin-proposal-function-bind",
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[
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"@babel/plugin-proposal-decorators",
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{
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"legacy": true
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}
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],
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[
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"@babel/plugin-proposal-class-properties",
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{
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"loose": true
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}
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],
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"@babel/plugin-proposal-export-namespace-from",
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"@babel/plugin-transform-react-constant-elements",
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"@babel/plugin-transform-runtime",
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"@babel/plugin-proposal-optional-chaining",
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"@babel/plugin-proposal-nullish-coalescing-operator"
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]
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}
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}
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},
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"husky": {
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"hooks": {
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"pre-commit": "lint-staged --config \"./configuration/lint-staged/lint-staged.config.js\""
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}
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}
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}
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