Files
cellxgene/client/package.json
Colin Megill e6e358ddc8 Gene sets UI, right sidebar refactor (#2097)
* prototyping

* render histos on open gene set

* prototyping

* render histos on open gene set

* factor out add genes to own component

* remove unused import

* mock reducer

* color by geneset stub

* menus and buttons

* geneset dialogue stub

* remove heatmap mock

* componetize histogram

* reenable add genes

* re-add isuserdefined

* test data

* remove have fetched

* add isExpanded state to gene, and pass to histogram

* expand button

* toggleable

* mini

* bump number of genes to 50

* don't clear diffexp on subset

* move create category to top

* render diffexp as geneset

* geneset show mean expression

* gene set reducer

* add geneset UI reducer

* wire e2e gene set loading prototype

* fix sniffing bug

* fix typo

* add gene modals

* client/src/actions/

* add autosave

* rename data-dir cli param

* add geneset, add gene, delete set

* prototype: remove csv upload placeholder

* handle delete gene from set

* prepopulate geneset with genes from modal

* add geneset: rename action

* icons, language consistency

* chevron after

* handle empty string case on genes for create geneset

* edit geneset

* fix language on create

* copy correction

* add popper2
upgrade react popper
upgrade react popper
adding popover2 package

* truncate uses tooltip2

* gene set button text typo

* remove logging

* moving server over

* remove test imports

* don't try to destructure map, use array.from

* fix add gene map datastructure error

* Revert "fix add gene map datastructure error"

This reverts commit b0eed45952.

* name --> genesetName, genes --> geneSymbols

* add gene to geneset, temporary format

* handle empty case, clear form input

* lint -- genesets wasn't passed via props

* userinfo

* move genes string to object conversion to action

* remove tmp gene description

* emptystring default for description

* remove empty string

* remove top level package json

* remove package lock as well

* remove flag for feature toggle

* remove comments in geneset

* comment cleanup

* remove comment

* revert diffexp genes to 10

* color by gene set

* disable color by gene set

* Gene menus are now inline, remove dead prototype code

* remove todo, magic number to variable

* remove jshint in rightsidebar

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* remove unused geneset validation code

* tmp format pending geneset description

* move magic number into variable

* reorganize genesetsUI reducer pending tests

* rewire edit given new action name

* add basic validation and feedback for geneset name uniqueness

* mv annoDialog

* mv label, repair paths

* Update client/src/components/brushableHistogram/header.js

Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>

* add imports for icon in histo

* update jest snapshots given blueprint/tooltip2 usage of index -1

* ensure no empty paragraph

* intent from blueprint

* remove remainder of jshint references

* do not push undo when autosave fires

* fix autosave bugs

* remove todos

* clamp to util

* scient to util

* revert clearing diffexp

* rename value to be more specific stacked bar

* clean up logging and commetns

* remove gene entry tests pending rewrite

* tab index -1

* update jest snapshot, blueprint tooltip 2

* caret margin

* snapshot update

* ensure histogram is centered

* add geneset actions to config

* comment maybeScientific

* comment clamp

* comment ui reducer

* remove prototype code

* remove error log

* remove references to bl.ocks

* componetize parseBulkGeneString

* catch case where geneset rename same name

* genesetui reducer tests

* add geneset ui to index reducer config

Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
2021-03-24 16:33:26 -04:00

191 lines
6.0 KiB
JSON

{
"name": "cellxgene",
"version": "0.16.7",
"license": "MIT",
"description": "cellxgene is a web application for the interactive exploration of single cell sequence data.",
"repository": "https://github.com/chanzuckerberg/cellxgene",
"scripts": {
"build": "npm run clean && webpack --config",
"clean": "rimraf build",
"dev": "npm run build -- configuration/webpack/webpack.config.dev.js",
"e2e": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
"e2e-annotations": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2eAnnotations.test.js",
"e2e-prod": "CXG_URL_BASE='https://cellxgene.cziscience.com/d/pbmc3k.cxg/' jest --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
"fmt": "eslint --fix src __tests__",
"lint": "eslint --fix src __tests__",
"prod": "npm run build -- configuration/webpack/webpack.config.prod.js",
"test": "jest --testPathIgnorePatterns e2e"
},
"engineStrict": true,
"engines": {
"npm": ">=3.0.0"
},
"eslintConfig": {
"extends": "./configuration/eslint/eslint.js"
},
"eslintIgnore": [
"src/util/stateManager/matrix_generated.js"
],
"resolutions": {
"eslint-scope": "3.7.1"
},
"browserslist": [
"Chrome > 60",
"Safari >= 10.1",
"iOS >= 10.3",
"Firefox >= 60",
"Edge >= 79",
"not Explorer > 0"
],
"dependencies": {
"@blueprintjs/core": "^3.30.0",
"@blueprintjs/icons": "^3.19.0",
"@blueprintjs/popover2": "^0.3.0",
"@blueprintjs/select": "^3.13.5",
"abort-controller": "^3.0.0",
"core-js": "^3.6.5",
"d3": "^4.10.0",
"d3-scale-chromatic": "^1.5.0",
"fastestsmallesttextencoderdecoder": "^1.0.22",
"flatbuffers": "^1.11.0",
"fuzzysort": "^1.1.4",
"gl-mat4": "^1.2.0",
"gl-matrix": "^3.3.0",
"gl-vec3": "^1.1.3",
"is-number": "^7.0.0",
"lodash": "^4.17.20",
"memoize-one": "^5.1.1",
"pako": "^1.0.11",
"react": "^16.13.1",
"react-async": "^10.0.1",
"react-dom": "^16.13.1",
"react-easy-emoji": "^1.4.0",
"react-flip-toolkit": "^7.0.12",
"react-helmet": "^5.2.1",
"react-icons": "^3.10.0",
"react-popper": "^2.2.4",
"react-redux": "^7.2.0",
"redux": "^4.0.5",
"redux-thunk": "^2.3.0",
"regenerator-runtime": "^0.13.7",
"regl": "^1.6.1",
"script-ext-html-webpack-plugin": "^2.1.4",
"tinyqueue": "^2.0.3",
"webpack-merge": "^5.0.9",
"whatwg-fetch": "^3.2.0"
},
"devDependencies": {
"@babel/core": "^7.10.5",
"@babel/plugin-proposal-class-properties": "^7.10.4",
"@babel/plugin-proposal-decorators": "^7.10.5",
"@babel/plugin-proposal-export-namespace-from": "^7.10.4",
"@babel/plugin-proposal-function-bind": "^7.10.5",
"@babel/plugin-proposal-nullish-coalescing-operator": "^7.10.4",
"@babel/plugin-proposal-optional-chaining": "^7.10.4",
"@babel/plugin-transform-react-constant-elements": "^7.10.4",
"@babel/plugin-transform-runtime": "^7.10.5",
"@babel/preset-env": "^7.10.4",
"@babel/preset-react": "^7.10.4",
"@babel/register": "^7.10.5",
"@babel/runtime": "^7.10.5",
"@blueprintjs/eslint-plugin": "^0.3.0",
"@sentry/webpack-plugin": "^1.12.0",
"babel-eslint": "^10.1.0",
"babel-jest": "^26.1.0",
"babel-loader": "^8.1.0",
"babel-preset-modern-browsers": "^14.2.1",
"chalk": "^4.1.0",
"cheerio": "^1.0.0-rc.3",
"clean-css": "^4.2.3",
"clean-webpack-plugin": "^3.0.0",
"codecov": "^3.7.1",
"connect-history-api-fallback": "^1.6.0",
"css-loader": "^3.6.0",
"eslint": "^7.4.0",
"eslint-config-airbnb": "^18.2.0",
"eslint-config-prettier": "^6.11.0",
"eslint-loader": "^3.0.4",
"eslint-plugin-compat": "^3.8.0",
"eslint-plugin-eslint-comments": "^3.2.0",
"eslint-plugin-filenames": "^1.3.2",
"eslint-plugin-import": "^2.22.0",
"eslint-plugin-jest": "^23.18.0",
"eslint-plugin-jsx-a11y": "^6.3.1",
"eslint-plugin-prettier": "^3.1.4",
"eslint-plugin-react": "^7.20.3",
"eslint-plugin-react-hooks": "^4.0.8",
"expect-puppeteer": "^4.4.0",
"express": "^4.17.1",
"favicons-webpack-plugin": "^3.0.1",
"file-loader": "^6.0.0",
"html-webpack-plugin": "^4.3.0",
"husky": "^4.2.5",
"jest": "^26.1.0",
"jest-circus": "^26.1.0",
"jest-environment-puppeteer": "^4.4.0",
"jest-fetch-mock": "^3.0.3",
"jest-puppeteer": "^4.4.0",
"json-loader": "^0.5.7",
"lint-staged": "^10.2.11",
"mini-css-extract-plugin": "^0.9.0",
"obsolete-webpack-plugin": "^0.5.6",
"optimize-css-assets-webpack-plugin": "^5.0.3",
"prettier": "^2.0.5",
"puppeteer": "^3.3.0",
"rimraf": "^3.0.2",
"serve-favicon": "^2.5.0",
"style-loader": "^1.2.1",
"sw-precache-webpack-plugin": "^1.0.0",
"terser-webpack-plugin": "^3.0.7",
"url-loader": "^4.1.0",
"webpack": "^4.43.0",
"webpack-cli": "^3.3.12",
"webpack-dev-middleware": "^3.7.2"
},
"jest": {
"testMatch": [
"**/__tests__/**/?(*.)(spec|test).js?(x)"
],
"setupFiles": [
"./__tests__/setupMissingGlobals.js"
],
"coverageDirectory": "./coverage/",
"collectCoverage": true
},
"babel": {
"env": {
"test": {
"presets": [
"@babel/preset-env",
"@babel/preset-react"
],
"plugins": [
"@babel/plugin-proposal-function-bind",
[
"@babel/plugin-proposal-decorators",
{
"legacy": true
}
],
[
"@babel/plugin-proposal-class-properties",
{
"loose": true
}
],
"@babel/plugin-proposal-export-namespace-from",
"@babel/plugin-transform-react-constant-elements",
"@babel/plugin-transform-runtime",
"@babel/plugin-proposal-optional-chaining",
"@babel/plugin-proposal-nullish-coalescing-operator"
]
}
}
},
"husky": {
"hooks": {
"pre-commit": "lint-staged --config \"./configuration/lint-staged/lint-staged.config.js\""
}
}
}