Madison Dunitz eb108feb37 Performance test annotations (#1908) ...

* make testing plan

* create annotaions sets for different num categories/dataset size

* annotation creation testing

* create scale and perf tests for annotations

* create make commands for tests

* get cell count if not set in test_datasets dict

2020-10-07 12:36:02 -05:00

..

app

config refactor (#1854)

2020-09-29 16:42:46 -05:00

auth

Partial fix for 1830 (#1863)

2020-09-30 11:45:10 -07:00

cli

config refactor (#1854)

2020-09-29 16:42:46 -05:00

common

remove AppFeature and all references to it in the code/tests (#1893)

2020-09-29 18:31:59 -05:00

compute

fix pca call in reembeddings (#1793)

2020-08-25 17:21:39 -07:00

converters

config refactor (#1854)

2020-09-29 16:42:46 -05:00

data_anndata

Refactoring cxg utility classes in preparation for CXG conversion tooling (#1739)

2020-08-14 16:51:13 -07:00

data_common

remove AppFeature and all references to it in the code/tests (#1893)

2020-09-29 18:31:59 -05:00

data_cxg

Dunitz 1685 hosted annotations (#1789)

2020-08-24 18:26:08 -05:00

db

config refactor (#1854)

2020-09-29 16:42:46 -05:00

eb

config refactor (#1854)

2020-09-29 16:42:46 -05:00

test

Performance test annotations (#1908)

2020-10-07 12:36:02 -05:00

__init__.py

config refactor (#1854)

2020-09-29 16:42:46 -05:00

__main__.py

Makefile modularity, test targets, and auto-formatting (#1070)

2019-12-27 14:43:37 -08:00

default_config.py

config refactor (#1854)

2020-09-29 16:42:46 -05:00

Makefile

Performance test annotations (#1908)

2020-10-07 12:36:02 -05:00

requirements-dev.txt

Change psycopg to be binary (#1842)

2020-09-16 14:46:59 -07:00

requirements-prepare.txt

merge louvain and prepare extra requires (#897)

2019-08-29 12:49:19 -07:00

requirements.txt

When reading annotations from tiledb, check if the values are byte literals and if so, decode them. Also pin s3f3 to 0.4.2. (#1788)

2020-08-22 09:42:11 -07:00