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https://github.com/chanzuckerberg/cellxgene.git
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5285556415
* Add basic authentication in the server A pattern for creating authentication methods is introduced, with three authentication types defined: none - no authentication session - like the current session based auth used for user annotations test - used to test the login/logout process end to end The config endpoint now returns informations about the authentication, like if the user is authenticated and their username. The redirect uri's for login and logout are also returned if the authentication type requires login This is the first a several PRs for authentication. *. Update server tests to avoid hardcoded ports test_api and test_nan_rest now use a common function for starting a test server, than will initially choose a random port.
62 lines
2.1 KiB
Python
62 lines
2.1 KiB
Python
from http import HTTPStatus
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import unittest
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import math
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from server.test import start_test_server, stop_test_server
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import server.test.decode_fbs as decode_fbs
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import requests
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VERSION = "v0.2"
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BAD_FILTER = {"filter": {"obs": {"annotation_value": [{"name": "xyz"}]}}}
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class WithNaNs(unittest.TestCase):
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"""Test Case for endpoints"""
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@classmethod
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def setUpClass(cls):
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cls.ps, cls.server = start_test_server(["test/test_datasets/nan.h5ad"])
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@classmethod
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def tearDownClass(cls):
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stop_test_server(cls.ps)
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def setUp(self):
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self.session = requests.Session()
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self.url_base = f"{self.server}/api/{VERSION}/"
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def test_initialize(self):
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endpoint = "schema"
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url = f"{self.url_base}{endpoint}"
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result = self.session.get(url)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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def test_data(self):
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endpoint = "data/var"
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url = f"{self.url_base}{endpoint}"
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filter = {"filter": {"var": {"index": [[0, 20]]}}}
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result = self.session.put(url, json=filter)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
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df = decode_fbs.decode_matrix_FBS(result.content)
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self.assertTrue(math.isnan(df["columns"][3][3]))
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def test_annotation_obs(self):
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endpoint = "annotations/obs"
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url = f"{self.url_base}{endpoint}"
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result = self.session.get(url)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
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df = decode_fbs.decode_matrix_FBS(result.content)
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self.assertTrue(math.isnan(df["columns"][2][0]))
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def test_annotation_var(self):
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endpoint = "annotations/var"
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url = f"{self.url_base}{endpoint}"
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result = self.session.get(url)
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self.assertEqual(result.status_code, HTTPStatus.OK)
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self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
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df = decode_fbs.decode_matrix_FBS(result.content)
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self.assertTrue(math.isnan(df["columns"][2][0]))
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