mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-19 19:08:11 +08:00
63 lines
1.8 KiB
Python
63 lines
1.8 KiB
Python
import os
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from flask import Flask, url_for, g
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from flask_compress import Compress
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from flask_cors import CORS
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from flask_restful_swagger_2 import get_swagger_blueprint
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# from werkzeug.contrib.profiler import ProfilerMiddleware
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from .web import webapp
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from .rest_api.rest import get_api_resources
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app = Flask(__name__)
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Compress(app)
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CORS(app)
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#Config
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CONFIG_FILE = os.environ.get("CXG_CONFIG_FILE", default="scanpy-test.cfg")
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CXG_DIR = os.environ.get("CXG_DIRECTORY", default="/Users/charlotteweaver/Documents/Git/cxg-v2/")
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SECRET_KEY = os.environ.get("CXG_SECRET_KEY", default="SparkleAndShine")
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# TODO remove the 2 when this is prod
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CXG_API_BASE = os.environ.get("CXG_API_BASE2", default="http://0.0.0.0:5005/api/")
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if not CONFIG_FILE:
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raise ValueError("No config file set for Flask application")
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app.config.from_pyfile(os.path.join(CXG_DIR, "config", CONFIG_FILE), silent=True)
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app.config.update(
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SECRET_KEY=SECRET_KEY,
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CXG_API_BASE=CXG_API_BASE,
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)
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app.config.update(
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DATA=os.path.join(CXG_DIR, app.config["DATA_DIR"]),
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)
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app.config['PROFILE'] = True
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# app.wsgi_app = ProfilerMiddleware(app.wsgi_app, restrictions=[15])
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# Application Data
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data = None
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if app.config["ENGINE"] == "scanpy":
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from .scanpy_engine.scanpy_engine import ScanpyEngine
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data = ScanpyEngine(app.config["DATA"])
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REACTIVE_LIMIT = 1_000_000
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# A list of swagger document objects
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docs = []
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resources = get_api_resources()
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docs.append(resources.get_swagger_doc())
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app.register_blueprint(webapp.bp)
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app.register_blueprint(resources.blueprint)
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app.register_blueprint(get_swagger_blueprint(docs, '/api/swagger', produces=["application/json"], title="cellxgene rest api",
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description='An API connecting ExpressionMatrix2 clustering algorithm to cellxgene'))
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app.add_url_rule('/', endpoint='index')
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if __name__ == "__main__":
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app.run(host='0.0.0.0', debug=True, port=5005) |