cellxgene/docs/index.md

cellxgene is an interactive data explorer for single-cell transcriptomics data designed to handle large datasets (1 million cells or more) and integrate with your favorite analysis tools

features

• Flexible selection and coloring of cells
• Differential expression of arbitrary sets of cells
• Single-gene analyses

getting started

install the package

> pip install cellxgene

launch the web app

> cellxgene --launch processed.h5ad

getting help

We'd love to hear from you!

For questions, suggestions, or accolades, join the #cellxgene-users channel on the CZI Science Slack and say "hi!".

For any errors, report bugs on Github.