fork/minimap2
1
0
Fork 0
mirror of https://github.com/lh3/minimap2.git synced 2026-10-05 23:58:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

disable chaining for avx2 - clr and hifi

Browse Source
This commit is contained in:
Saurabh
2021-11-27 10:42:22 -05:00
committed by Heng Li
parent 3b1deac0a5
commit 03540c47b3
3 changed files with 25 additions and 29 deletions
Download Patch File Download Diff File Expand all files Collapse all files
options.c
+7 -1
View File
@@ -1,7 +1,7 @@
#include <stdio.h>
#include <limits.h>
#include "mmpriv.h"
extern bool enable_vect_dp_chaining;
void mm_idxopt_init(mm_idxopt_t *opt)
{
memset(opt, 0, sizeof(mm_idxopt_t));
@@ -94,6 +94,9 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
mo->bw = mo->bw_long = 2000;
mo->occ_dist = 0;
} else if (strcmp(preset, "map10k") == 0 || strcmp(preset, "map-pb") == 0) {
#if defined (PARALLEL_CHAINING) && (defined(__AVX2__))
enable_vect_dp_chaining = false;
#endif
io->flag |= MM_I_HPC, io->k = 19;
} else if (strcmp(preset, "ava-pb") == 0) {
io->flag |= MM_I_HPC, io->k = 19, io->w = 5;
@@ -102,6 +105,9 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
mo->bw_long = mo->bw;
mo->occ_dist = 0;
} else if (strcmp(preset, "map-hifi") == 0 || strcmp(preset, "map-ccs") == 0) {
#if defined (PARALLEL_CHAINING) && (defined(__AVX2__))
enable_vect_dp_chaining = false;
#endif
io->flag = 0, io->k = 19, io->w = 19;
mo->max_gap = 10000;
mo->a = 1, mo->b = 4, mo->q = 6, mo->q2 = 26, mo->e = 2, mo->e2 = 1;