r965: added --chain-gap-scale for #540

2026-09-29 14:18:11 +08:00 · 2020-01-18 10:29:33 -05:00
parent cdb7857841
commit 040f74102c
8 changed files with 19 additions and 9 deletions
@@ -245,6 +245,9 @@ Check up to
 partial chains during chaining [5000]. This is a heuristic to avoid quadratic
 time complexity in the worst case.
 .TP
+.BI --chain-gap-scale \ FLOAT
+Scale of gap cost during chaining [1.0]
+.TP
 .B --no-long-join
 Disable the long gap patching heuristic. When this option is applied, the
 maximum alignment gap is mostly controlled by