r965: added --chain-gap-scale for #540

2026-09-15 13:07:55 +08:00 · 2020-01-18 10:29:33 -05:00
parent cdb7857841
commit 040f74102c
8 changed files with 19 additions and 9 deletions
--- a/python/cmappy.pxd
+++ b/python/cmappy.pxd
@@ -20,6 +20,7 @@ cdef extern from "minimap.h":
 		int max_chain_skip, max_chain_iter
 		int min_cnt
 		int min_chain_score
+		float chain_gap_scale
 		float mask_level
 		float pri_ratio
 		int best_n