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added --junc-pen; it does nothing for now
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@@ -172,6 +172,7 @@ int mm_set_opt(const char *preset, mm_idxopt_t *io, mm_mapopt_t *mo)
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mo->a = 1, mo->b = 2, mo->q = 2, mo->e = 1, mo->q2 = 32, mo->e2 = 0;
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mo->noncan = 9;
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mo->junc_bonus = 9;
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mo->junc_pen = 5;
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mo->zdrop = 200, mo->zdrop_inv = 100; // because mo->a is halved
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if (strcmp(preset, "splice:hq") == 0)
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mo->noncan = 5, mo->b = 4, mo->q = 6, mo->q2 = 24;
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