r454: rechain with higher max_occ if no good chain

2026-10-03 02:38:12 +08:00 · 2017-09-29 19:24:32 -04:00
parent 0d4ecd19ee
commit 04fb2c2ec0
3 changed files with 31 additions and 6 deletions
@@ -106,6 +106,7 @@ typedef struct {

 	float mid_occ_frac;  // only used by mm_mapopt_update(); see below
 	int32_t mid_occ;     // ignore seeds with occurrences above this threshold
+	int32_t max_occ;
 	int mini_batch_size; // size of a batch of query bases to process in parallel
 } mm_mapopt_t;