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r1105: avoid long running time occasionally (#771)
Caused by highly repetitive minimizers on a query sequence. The solution is to filter out these query minimizers.
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@@ -163,6 +163,7 @@ typedef struct {
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int pe_ori, pe_bonus;
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float mid_occ_frac; // only used by mm_mapopt_update(); see below
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float q_occ_frac;
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int32_t min_mid_occ, max_mid_occ;
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int32_t mid_occ; // ignore seeds with occurrences above this threshold
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int32_t max_occ, max_max_occ, occ_dist;
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