r1105: avoid long running time occasionally (#771)

Caused by highly repetitive minimizers on a query sequence. The solution is to
filter out these query minimizers.
This commit is contained in:
Heng Li
2021-08-15 19:43:01 -04:00
parent cc14d1afdf
commit 05a8a45d44
8 changed files with 40 additions and 2 deletions
+1
View File
@@ -19,6 +19,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->min_mid_occ = 10;
opt->max_mid_occ = 1000000;
opt->sdust_thres = 0; // no SDUST masking
opt->q_occ_frac = 0.02f;
opt->min_cnt = 3;
opt->min_chain_score = 40;