r286: ignore introns when computing max seg score

2026-10-07 07:38:11 +08:00 · 2017-08-12 10:58:16 -04:00
parent 2d11aaa830
commit 0f4c823b0c
4 changed files with 21 additions and 13 deletions
@@ -60,4 +60,9 @@ void mm_set_mapq(int n_regs, mm_reg1_t *regs, int min_chain_sc);
 }
 #endif

+static inline int32_t mm_min_intron_len(int32_t q, int32_t e, int32_t q_intron)
+{
+	return q_intron > q? (int)((float)(q_intron - q) / e + .999) : INT32_MAX;
+}
+
 #endif