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r1028: backport minigraph -U

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Heng Li
2021-05-01 15:41:39 -04:00
parent e8823a3709
commit 0f5608c4a4
4 changed files with 11 additions and 5 deletions
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minimap.h
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@@ -146,7 +146,7 @@ typedef struct {
int pe_ori, pe_bonus;
float mid_occ_frac; // only used by mm_mapopt_update(); see below
int32_t min_mid_occ;
int32_t min_mid_occ, max_mid_occ;
int32_t mid_occ; // ignore seeds with occurrences above this threshold
int32_t max_occ, max_max_occ, occ_dist;
int64_t mini_batch_size; // size of a batch of query bases to process in parallel