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r365: documented the "sr" preset

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Heng Li
2017-09-14 12:57:21 -04:00
parent 4d3768bf26
commit 0f7455cefa
4 changed files with 14 additions and 5 deletions
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align.c
+1 -1
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@@ -143,7 +143,7 @@ static void mm_align_pair(void *km, const mm_mapopt_t *opt, int qlen, const uint
for (i = 0; i < qlen; ++i) fputc("ACGTN"[qseq[i]], stderr);
fputc('\n', stderr);
}
if (opt->flag & MM_F_SR) {
if (opt->flag & MM_F_APPROX_EXT) {
flag |= KSW_EZ_APPROX_MAX;
if (flag & KSW_EZ_EXTZ_ONLY) flag |= KSW_EZ_APPROX_DROP;
}