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r365: documented the "sr" preset

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Heng Li
2017-09-14 12:57:21 -04:00
parent 4d3768bf26
commit 0f7455cefa
4 changed files with 14 additions and 5 deletions
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minimap2.1
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@@ -1,4 +1,4 @@
.TH minimap2 1 "6 September 2017" "minimap2-2.1.1-r341" "Bioinformatics tools"
.TH minimap2 1 "14 September 2017" "minimap2-2.1.1-r364-dirty" "Bioinformatics tools"
.SH NAME
.PP
minimap2 - mapping and alignment between collections of DNA sequences
@@ -333,6 +333,12 @@ CIGAR operator; 2) long insertions are disabled; 3) deletion and insertion gap
costs are different during chaining; 4) the computation of the
.RB ` ms '
tag ignores introns to demote hits to pseudogenes.
.TP
.B sr
Short single-end reads without splicing
.RB ( -k21
.B -w11 -A2 -B8 -O12,32 -E2,1 -r50 -p.5 -N20 -f1000 -n2 -m20 -s40 -g100 -K50m
.BR --approx-ext ).
.RE
.SS Miscellaneous options
.TP 10