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r309: improved SAM header output

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Heng Li
2017-08-25 10:35:58 +08:00
parent 240f6caaff
commit 0fe1a224ab
9 changed files with 61 additions and 42 deletions
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bseq.c
+1 -3
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@@ -8,7 +8,6 @@
KSEQ_INIT(gzFile, gzread)
struct mm_bseq_file_s {
int is_eof;
gzFile fp;
kseq_t *ks;
};
@@ -53,12 +52,11 @@ mm_bseq1_t *mm_bseq_read(mm_bseq_file_t *fp, int chunk_size, int with_qual, int
size += seqs[n++].l_seq;
if (size >= chunk_size) break;
}
if (size < chunk_size) fp->is_eof = 1;
*n_ = n;
return seqs;
}
int mm_bseq_eof(mm_bseq_file_t *fp)
{
return fp->is_eof;
return ks_eof(fp->ks->f);
}