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fixed a bug on rev strand; added example

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Heng Li
2017-09-16 17:51:13 -04:00
parent b22703a354
commit 10bd4079d1
3 changed files with 58 additions and 9 deletions
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17
python/cminimap2.pxd
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@@ -1,4 +1,4 @@
from libc.stdint cimport uint8_t, int32_t, int64_t, uint32_t, uint64_t
from libc.stdint cimport int8_t, uint8_t, int32_t, int64_t, uint32_t, uint64_t
cdef extern from "minimap.h":
#
@@ -79,13 +79,14 @@ cdef extern from "minimap.h":
#
cdef extern from "cminimap2.h":
ctypedef struct mm_hitpy_t:
const char *ctg;
int32_t ctg_start, ctg_end;
int32_t qry_start, qry_end;
int32_t blen, NM, ctg_len;
uint8_t strand, mapq, is_primary, trans_strand;
int32_t n_cigar32;
uint32_t *cigar32;
const char *ctg
int32_t ctg_start, ctg_end
int32_t qry_start, qry_end
int32_t blen, NM, ctg_len
uint8_t mapq, is_primary
int8_t strand, trans_strand
int32_t n_cigar32
uint32_t *cigar32
void mm_reg2hitpy(const mm_idx_t *mi, mm_reg1_t *r, mm_hitpy_t *h)
void mm_free_reg1(mm_reg1_t *r)