r876: skip DP if taking too much RAM (#259)

This commit is contained in:
Heng Li
2018-11-05 11:43:10 -05:00
parent fd64dd26f6
commit 13981404e2
4 changed files with 13 additions and 2 deletions
+1
View File
@@ -139,6 +139,7 @@ typedef struct {
int32_t mid_occ; // ignore seeds with occurrences above this threshold
int32_t max_occ;
int mini_batch_size; // size of a batch of query bases to process in parallel
int64_t max_sw_mat;
const char *split_prefix;
} mm_mapopt_t;