r876: skip DP if taking too much RAM (#259)

2026-10-04 09:48:13 +08:00 · 2018-11-05 11:43:10 -05:00
parent fd64dd26f6
commit 13981404e2
4 changed files with 13 additions and 2 deletions
@@ -373,6 +373,11 @@ It helps to avoid tiny terminal exons. [6]
 .B --no-end-flt
 Don't filter seeds towards the ends of chains before performing base-level
 alignment.
+.TP
+.BI --cap-sw-mat \ NUM
+Skip alignment if the DP matrix size is above
+.IR NUM .
+Set 0 to disable [0].
 .SS Input/output options
 .TP 10
 .B -a