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Release minimap2-2.20 (r1061)

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Heng Li
2021-05-27 15:26:04 -04:00
parent ca19463268
commit 15471bd629
10 changed files with 25 additions and 13 deletions
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map.c
+1 -1
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@@ -277,7 +277,7 @@ void mm_map_frag(const mm_idx_t *mi, int n_segs, const int *qlens, const char **
opt->chain_gap_scale * 0.01 * mi->k, 0.0f, is_splice, n_segs, n_a, a, &n_regs0, &u, b->km);
}
if (opt->bw_long > opt->bw && (opt->flag & MM_F_NO_LJOIN) == 0 && n_segs == 1 && n_regs0 > 1) { // re-chain/long-join for long sequences
if (opt->bw_long > opt->bw && (opt->flag & (MM_F_SPLICE|MM_F_SR|MM_F_NO_LJOIN)) == 0 && n_segs == 1 && n_regs0 > 1) { // re-chain/long-join for long sequences
int32_t st = (int32_t)a[0].y, en = (int32_t)a[(int32_t)u[0] - 1].y;
if (qlen_sum - (en - st) > opt->rmq_rescue_size || en - st > qlen_sum * opt->rmq_rescue_ratio) {
int32_t i;