r784: support the =/X CIGAR operators (#156)

2026-10-04 21:48:12 +08:00 · 2018-05-30 16:11:22 -04:00
parent a3afeec0b2
commit 154d2caf5b
5 changed files with 81 additions and 4 deletions
@@ -397,6 +397,9 @@ is assumed. [none]
 .B --MD
 Output the MD tag (see the SAM spec).
 .TP
+.B --eqx
+Output =/X CIGAR operators for sequence match/mismatch.
+.TP
 .B -Y
 In SAM output, use soft clipping for supplementary alignments.
 .TP