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r523: fixed a performance bug in ksw2_ll

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Wont' affect accuracy.
This commit is contained in:
Heng Li
2017-10-20 13:00:10 -04:00
parent 55dcbefe87
commit 15ed0712c2
2 changed files with 2 additions and 2 deletions
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ksw2_ll_sse.c
+1 -1
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@@ -122,7 +122,7 @@ int ksw_ll_i16(void *q_, int tlen, const uint8_t *target, int _gapo, int _gape,
f = _mm_max_epi16(f, h); f = _mm_max_epi16(f, h);
h = _mm_load_si128(H0 + j); h = _mm_load_si128(H0 + j);
} }
for (k = 0; LIKELY(k < 16); ++k) { for (k = 0; LIKELY(k < 8); ++k) {
f = _mm_slli_si128(f, 2); f = _mm_slli_si128(f, 2);
for (j = 0; LIKELY(j < slen); ++j) { for (j = 0; LIKELY(j < slen); ++j) {
h = _mm_load_si128(H1 + j); h = _mm_load_si128(H1 + j);
main.c
+1 -1
View File
@@ -6,7 +6,7 @@
#include "mmpriv.h" #include "mmpriv.h"
#include "getopt.h" #include "getopt.h"
#define MM_VERSION "2.2-r520-dirty" #define MM_VERSION "2.2-r523-dirty"
#ifdef __linux__ #ifdef __linux__
#include <sys/resource.h> #include <sys/resource.h>