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dev-r1079: per-read error rate

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more tuning needed
This commit is contained in:
Heng Li
2021-07-18 20:38:53 -04:00
parent 8a6edab847
commit 161ae7ff73
6 changed files with 85 additions and 34 deletions
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mmpriv.h
+1
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@@ -62,6 +62,7 @@ void mm_sketch(void *km, const char *str, int len, int w, int k, uint32_t rid, i
mm_seed_t *mm_collect_matches(void *km, int *_n_m, int qlen, int max_occ, int max_max_occ, int dist, const mm_idx_t *mi, const mm128_v *mv, int64_t *n_a, int *rep_len, int *n_mini_pos, uint64_t **mini_pos);
double mm_event_identity(const mm_reg1_t *r);
int mm_write_sam_hdr(const mm_idx_t *mi, const char *rg, const char *ver, int argc, char *argv[]);
void mm_write_paf(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, const mm_reg1_t *r, void *km, int opt_flag);
void mm_write_paf3(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, const mm_reg1_t *r, void *km, int opt_flag, int rep_len);