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r281: don't open long gaps on query

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Heng Li
2017-08-10 15:04:59 -04:00
parent c59b0781bc
commit 163fa36ee6
5 changed files with 41 additions and 13 deletions
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main.c
+2 -2
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@@ -8,7 +8,7 @@
#include "minimap.h"
#include "mmpriv.h"
#define MM_VERSION "2.0-r280-dirty"
#define MM_VERSION "2.0-r281-dirty"
void liftrlimit()
{
@@ -134,7 +134,7 @@ int main(int argc, char *argv[])
k = 15, w = 5;
opt.flag |= MM_F_CDNA;
opt.max_gap = 2000, opt.max_gap_ref = opt.bw = 100000;
opt.a = 1, opt.b = 2, opt.q = 2, opt.e = 1, opt.q2 = 70, opt.e2 = 0;
opt.a = 1, opt.b = 2, opt.q = 2, opt.e = 1, opt.q2 = 42, opt.e2 = 0;
opt.zdrop = 200;
} else {
fprintf(stderr, "[E::%s] unknown preset '%s'\n", __func__, optarg);