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r849: option -P doesn't work

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I don't know why I haven't found it at the beginning.
This commit is contained in:
Heng Li
2018-10-04 16:11:59 -04:00
parent 97f97306a4
commit 170863e553
2 changed files with 7 additions and 2 deletions
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options.c
+5
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@@ -174,5 +174,10 @@ int mm_check_opt(const mm_idxopt_t *io, const mm_mapopt_t *mo)
fprintf(stderr, "[ERROR]\033[1;31m Z-drop should not be less than inversion-Z-drop\033[0m\n");
return -5;
}
if ((mo->flag & MM_F_NO_PRINT_2ND) && (mo->flag & MM_F_ALL_CHAINS)) {
if (mm_verbose >= 1)
fprintf(stderr, "[ERROR]\033[1;31m -X/-P and --secondary=no can't be applied at the same time\033[0m\n");
return -5;
}
return 0;
}