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Use the full MIDNSHP=X string whenever printing CIGAR strings

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Define MM_CIGAR_STR to the full string of CIGAR operators (including
the 'B' operator as well) and use it throughout the C code.

It would be possible to use it from the Cython code too, but it's easier
to keep that as a Cython string literal to avoid adding extra runtime
code to handle locale conversion.
This commit is contained in:
John Marshall
2021-07-02 13:03:03 -04:00
committed by Heng Li
parent 459ce04c84
commit 177eef259d
6 changed files with 10 additions and 8 deletions
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align.c
+1 -1
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@@ -333,7 +333,7 @@ static void mm_align_pair(void *km, const mm_mapopt_t *opt, int qlen, const uint
int i;
fprintf(stderr, "score=%d, cigar=", ez->score);
for (i = 0; i < ez->n_cigar; ++i)
fprintf(stderr, "%d%c", ez->cigar[i]>>4, "MIDN"[ez->cigar[i]&0xf]);
fprintf(stderr, "%d%c", ez->cigar[i]>>4, MM_CIGAR_STR[ez->cigar[i]&0xf]);
fprintf(stderr, "\n");
}
}