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r539: use --splice-flank=yes by default

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In human/mouse, the GTr..yAG pattern occurs to 91/92% of all GT-AG introns.
Modeling r..y clearly leads to higher accuracy. However, in SIRV, this
percentage is reduced to ~60%. The default "--splice --splice-flank=yes"
leads to lower accuracy. If someone benchmark minimap2 on SIRV, this would be
bad, but minimap2 is developed for practical applications, not for benchmarks.
I will live with that.
This commit is contained in:
Heng Li
2017-10-28 22:29:55 -04:00
parent f22a94e868
commit 192217a10c
3 changed files with 27 additions and 7 deletions
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main.c
+1 -1
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@@ -6,7 +6,7 @@
#include "mmpriv.h"
#include "getopt.h"
#define MM_VERSION "2.3-r538-dirty"
#define MM_VERSION "2.3-r539-dirty"
#ifdef __linux__
#include <sys/resource.h>