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r224: inversion alignment around Z-drop break

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Heng Li
2017-07-29 13:09:10 -04:00
parent 120bebc290
commit 19d6ec885e
7 changed files with 60 additions and 30 deletions
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format.c
+2 -1
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@@ -56,7 +56,8 @@ static void mm_sprintf_lite(kstring_t *s, const char *fmt, ...)
static inline void write_tags(kstring_t *s, const mm_reg1_t *r)
{
mm_sprintf_lite(s, "\tcm:i:%d\ts1:i:%d", r->cnt, r->score);
int type = r->inv? 'I' : r->id == r->parent? 'P' : 'S';
mm_sprintf_lite(s, "\ttp:A:%c\tcm:i:%d\ts1:i:%d", type, r->cnt, r->score);
if (r->parent == r->id) mm_sprintf_lite(s, "\ts2:i:%d", r->subsc);
if (r->split) mm_sprintf_lite(s, "\tzd:i:%d", r->split);
if (r->p) mm_sprintf_lite(s, "\tNM:i:%d\tms:i:%d\tAS:i:%d\tnn:i:%d", r->p->n_diff, r->p->dp_max, r->p->dp_score, r->p->n_ambi);