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r118: bugfix - regs unsorted before filtering

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Heng Li
2017-06-30 12:52:28 -04:00
parent 5dcd8f8965
commit 1a903486b9
5 changed files with 26 additions and 11 deletions
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format.c
+1 -1
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@@ -125,7 +125,7 @@ void mm_write_sam(kstring_t *s, const mm_idx_t *mi, const bseq1_t *t, const mm_r
} else mm_sprintf_lite(s, "*");
mm_sprintf_lite(s, "\t*\t0\t0\t");
if ((flag & 0x900) == 0) sam_write_sq(s, t->seq, t->l_seq, r->rev, r->rev);
else if (flag & 0x100) mm_sprintf_lite(s, "\t*");
else if (flag & 0x100) mm_sprintf_lite(s, "*");
else sam_write_sq(s, t->seq + r->qs, r->qe - r->qs, r->rev, r->rev);
mm_sprintf_lite(s, "\t*"); // quality
write_tags(s, r);