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r118: bugfix - regs unsorted before filtering

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Heng Li
2017-06-30 12:52:28 -04:00
parent 5dcd8f8965
commit 1a903486b9
5 changed files with 26 additions and 11 deletions
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map.c
+1 -1
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@@ -235,7 +235,7 @@ mm_reg1_t *mm_map_frag(const mm_mapopt_t *opt, const mm_idx_t *mi, mm_tbuf_t *b,
kfree(b->km, m);
n_u = mm_chain_dp(opt->max_gap, opt->bw, opt->max_chain_skip, opt->min_cnt, opt->min_chain_score, n_a, a, &u, b->km);
regs = mm_gen_regs(qlen, n_u, u, a);
regs = mm_gen_regs(b->km, qlen, n_u, u, a);
*n_regs = n_u;
if (!(opt->flag & MM_F_AVA)) { // don't choose primary mapping(s) for read overlap
mm_select_sub(b->km, opt->mask_level, opt->pri_ratio, n_regs, regs);