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r472: fixed a bug when printing MAPQ/CIGAR

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Heng Li
2017-10-05 12:46:11 -04:00
parent abf2a90363
commit 1a90bc8603
2 changed files with 3 additions and 3 deletions
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format.c
+2 -2
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@@ -299,8 +299,8 @@ void mm_write_sam2(kstring_t *s, const mm_idx_t *mi, const mm_bseq1_t *t, int se
if (r == 0) {
if (r_prev) {
this_rid = r_prev->rid, this_pos = r_prev->rs;
mm_sprintf_lite(s, "\t%s\t%d", mi->seq[this_rid].name, this_pos);
} else mm_sprintf_lite(s, "\t0\t*");
mm_sprintf_lite(s, "\t%s\t%d\t0\t*", mi->seq[this_rid].name, this_pos);
} else mm_sprintf_lite(s, "\t0\t*\t0\t*");
} else {
this_rid = r->rid, this_pos = r->rs, this_rev = r->rev;
mm_sprintf_lite(s, "\t%s\t%d\t%d\t", mi->seq[r->rid].name, r->rs+1, r->mapq);