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Heng Li
2017-06-06 10:16:33 -04:00
parent acc7382a30
commit 1a9fc04cf0
7 changed files with 147 additions and 120 deletions
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Makefile
+5 -3
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@@ -2,7 +2,7 @@ CC= gcc
CFLAGS= -g -Wall -O2 -Wc++-compat -Wno-unused-function
CPPFLAGS=
INCLUDES= -I.
OBJS= kalloc.o kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o
OBJS= kalloc.o kthread.o misc.o bseq.o sketch.o chain.o sdust.o index.o map.o
PROG= minimap2
PROG_EXTRA= sdust
LIBS= -lm -lz -lpthread
@@ -34,9 +34,11 @@ depend:
# DO NOT DELETE
bseq.o: bseq.h kseq.h
index.o: kthread.h bseq.h minimap.h kvec.h kalloc.h khash.h
chain.o: minimap.h mmpriv.h kalloc.h
index.o: kthread.h bseq.h minimap.h mmpriv.h kvec.h kalloc.h khash.h
kalloc.o: kalloc.h
main.o: bseq.h minimap.h
main.o: bseq.h minimap.h mmpriv.h
map.o: kthread.h kvec.h kalloc.h sdust.h minimap.h mmpriv.h bseq.h
misc.o: minimap.h ksort.h
sdust.o: kalloc.h kdq.h kvec.h sdust.h
sketch.o: kvec.h kalloc.h minimap.h