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r167: long join threshold depends on gap

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also caught a bug for reverse strand join
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Heng Li
2017-07-09 10:38:51 -04:00
parent 34ed85d46a
commit 1ac48556ae
3 changed files with 5 additions and 4 deletions
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map.c
+1 -1
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@@ -28,7 +28,7 @@ void mm_mapopt_init(mm_mapopt_t *opt)
opt->max_join_long = 20000;
opt->max_join_short = 2000;
opt->min_join_flank_sc = 500;
opt->min_join_flank_sc = 1000;
opt->a = 2, opt->b = 4, opt->q = 4, opt->e = 2, opt->q2 = 24, opt->e2 = 1;
opt->zdrop = 400;